Expression of 1-1-1.3.2.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.928620.617
27DAP/17DAP0.825390.513
39DAP/27DAP2.040020.033
41DAP/39DAP0.721250.17
42DAP/41DAP1.066911
43DAP/42DAP1.139141
47DAP/43DAP0.870460.625
52DAP/47DAP1.000320.816
57DAP/52DAP1.438770.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.989140.693
17DAP/reference0.935050.368
27DAP/reference1.005830.885
39DAP/reference0.896340.24
41DAP/reference0.740220.011
42DAP/reference1.080040.231
43DAP/reference1.16160.014
47DAP/reference1.138610.081
52DAP/reference1.263750.072
57DAP/reference1.519550.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.899310.496
27DAP/17DAP1.166960.579
39DAP/27DAP0.873180.426
41DAP/39DAP1.140140.753
42DAP/41DAP0.977590.774
43DAP/42DAP1.080770.554
47DAP/43DAP0.9620.833
52DAP/47DAP0.86770.591
57DAP/52DAP1.337870.547
57DAP/7DAP0.724930.145

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.000440.025
17DAP/reference1.5440.006
27DAP/reference1.400820.007
39DAP/reference1.493680.007
41DAP/reference1.33640.037
42DAP/reference1.525640.009
43DAP/reference1.163330.048
47DAP/reference1.332680.109
52DAP/reference1.473890.029
57DAP/reference1.447920.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.793240.028
17DAP/reference1.09340.599
27DAP/reference1.193380.367
39DAP/reference1.169070.316
41DAP/reference1.376370.006
42DAP/reference1.314160.019
43DAP/reference0.825560.243
47DAP/reference1.318680.008
52DAP/reference0.970060.469
57DAP/reference0.848760.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.653950.031
17DAP/reference1.178810.87
27DAP/reference1.328340.105
39DAP/reference1.317790.029
41DAP/reference1.220980.139
42DAP/reference1.346770.037
43DAP/reference1.25430.081
47DAP/reference1.190950.443
52DAP/reference1.288250.058
57DAP/reference2.069680.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.656220.966
26DAP/20DAP1.219730.629
34DAP/26DAP1.218470.542
51DAP/34DAP0.4163
52DAP/51DAP0.840991
53DAP/52DAP0.976360.835
55DAP/53DAP0.704770.5
57DAP/55DAP0.918990.677
62DAP/57DAP1.272530.445
68DAP/62DAP1.452170.182
68DAP/14DAP2.607750.02

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.039460.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.501790.063
Mature Green Tomato/Ripe Tomato1.29250.69
Immature Eggplant/Mature Eggplant1.102390.3
Ripe Pepper/Ripe Tomato0.950271
Mature Eggplant/Ripe Tomato1.922980.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.813990.503
1-1-2/M821.208041
12-2/M820.799490.727
12-4/M820.61323
1-3/M82N/AN/A
2-1-1/M820.682740.465
2-1/M82N/AN/A
2-6/M820.981161
3-2/M82N/AN/A
4-1-1/M820.938051
4-1/M820.73797
4-3-2/M821.92242
4-3/M821.0071
5-3/M821.304520.572
6-2/M821.153391
6-3/M821.027391
7-1/M82N/AN/A
7-2/M821.382610.385
9-3-2/M821.24384

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.978141
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.077471
IL12-4/WTpooled1.042290.891
IL1-4/WTpooledN/AN/A
WT/WTpooled1.037781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.155330.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.065470.921
DC3000/delta hrp 6h1.000190.95
DC3000/delta hrp 12h1.004561
DC3000/delta hrp 24h1.248640.143

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.65616
DC3000 delta B/DC3000 delta AB1.56697

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.002941
Exp 36h0.874050.699
Exp 60h0.820670.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998011
Var 0h1.453920.325
Var 12h I row2-row10.966320.948
Var 12h NI row2-row11.483060.235
Var 36h I row2-row11.760710.908
Var 36h NI row2-row10.83170.706
Var 60h I row2-row10.68753
Var 60h NI row2-row10.819180.756
Time course 0hI-0hNI0.914550.423
Time course 12hI-12hNI0.995231
Time course 36hI-36hNI1.385380.218
Time course 60hI-60hNI1.093921

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.92550.33
transgenic ySAMdc/azygous control (breaker)1.493760.178
transgenic ySAMdc/azygous control (red)1.140430.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.164110.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.029751

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.986651
Manapal/WT (break)1.116850.14
Manapal/WT (red)1.073551