Expression of 1-1-1.3.2.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92862 | 0.617 |
27DAP/17DAP | 0.82539 | 0.513 |
39DAP/27DAP | 2.04002 | 0.033 |
41DAP/39DAP | 0.72125 | 0.17 |
42DAP/41DAP | 1.06691 | 1 |
43DAP/42DAP | 1.13914 | 1 |
47DAP/43DAP | 0.87046 | 0.625 |
52DAP/47DAP | 1.00032 | 0.816 |
57DAP/52DAP | 1.43877 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98914 | 0.693 |
17DAP/reference | 0.93505 | 0.368 |
27DAP/reference | 1.00583 | 0.885 |
39DAP/reference | 0.89634 | 0.24 |
41DAP/reference | 0.74022 | 0.011 |
42DAP/reference | 1.08004 | 0.231 |
43DAP/reference | 1.1616 | 0.014 |
47DAP/reference | 1.13861 | 0.081 |
52DAP/reference | 1.26375 | 0.072 |
57DAP/reference | 1.51955 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89931 | 0.496 |
27DAP/17DAP | 1.16696 | 0.579 |
39DAP/27DAP | 0.87318 | 0.426 |
41DAP/39DAP | 1.14014 | 0.753 |
42DAP/41DAP | 0.97759 | 0.774 |
43DAP/42DAP | 1.08077 | 0.554 |
47DAP/43DAP | 0.962 | 0.833 |
52DAP/47DAP | 0.8677 | 0.591 |
57DAP/52DAP | 1.33787 | 0.547 |
57DAP/7DAP | 0.72493 | 0.145 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.00044 | 0.025 |
17DAP/reference | 1.544 | 0.006 |
27DAP/reference | 1.40082 | 0.007 |
39DAP/reference | 1.49368 | 0.007 |
41DAP/reference | 1.3364 | 0.037 |
42DAP/reference | 1.52564 | 0.009 |
43DAP/reference | 1.16333 | 0.048 |
47DAP/reference | 1.33268 | 0.109 |
52DAP/reference | 1.47389 | 0.029 |
57DAP/reference | 1.44792 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79324 | 0.028 |
17DAP/reference | 1.0934 | 0.599 |
27DAP/reference | 1.19338 | 0.367 |
39DAP/reference | 1.16907 | 0.316 |
41DAP/reference | 1.37637 | 0.006 |
42DAP/reference | 1.31416 | 0.019 |
43DAP/reference | 0.82556 | 0.243 |
47DAP/reference | 1.31868 | 0.008 |
52DAP/reference | 0.97006 | 0.469 |
57DAP/reference | 0.84876 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.65395 | 0.031 |
17DAP/reference | 1.17881 | 0.87 |
27DAP/reference | 1.32834 | 0.105 |
39DAP/reference | 1.31779 | 0.029 |
41DAP/reference | 1.22098 | 0.139 |
42DAP/reference | 1.34677 | 0.037 |
43DAP/reference | 1.2543 | 0.081 |
47DAP/reference | 1.19095 | 0.443 |
52DAP/reference | 1.28825 | 0.058 |
57DAP/reference | 2.06968 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.65622 | 0.966 |
26DAP/20DAP | 1.21973 | 0.629 |
34DAP/26DAP | 1.21847 | 0.542 |
51DAP/34DAP | 0.4163 | |
52DAP/51DAP | 0.84099 | 1 |
53DAP/52DAP | 0.97636 | 0.835 |
55DAP/53DAP | 0.70477 | 0.5 |
57DAP/55DAP | 0.91899 | 0.677 |
62DAP/57DAP | 1.27253 | 0.445 |
68DAP/62DAP | 1.45217 | 0.182 |
68DAP/14DAP | 2.60775 | 0.02 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.03946 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.50179 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.2925 | 0.69 |
Immature Eggplant/Mature Eggplant | 1.10239 | 0.3 |
Ripe Pepper/Ripe Tomato | 0.95027 | 1 |
Mature Eggplant/Ripe Tomato | 1.92298 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.81399 | 0.503 |
1-1-2/M82 | 1.20804 | 1 |
12-2/M82 | 0.79949 | 0.727 |
12-4/M82 | 0.61323 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.68274 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98116 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.93805 | 1 |
4-1/M82 | 0.73797 | |
4-3-2/M82 | 1.92242 | |
4-3/M82 | 1.0071 | |
5-3/M82 | 1.30452 | 0.572 |
6-2/M82 | 1.15339 | 1 |
6-3/M82 | 1.02739 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.38261 | 0.385 |
9-3-2/M82 | 1.24384 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97814 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.07747 | 1 |
IL12-4/WTpooled | 1.04229 | 0.891 |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.03778 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15533 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06547 | 0.921 |
DC3000/delta hrp 6h | 1.00019 | 0.95 |
DC3000/delta hrp 12h | 1.00456 | 1 |
DC3000/delta hrp 24h | 1.24864 | 0.143 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.65616 | |
DC3000 delta B/DC3000 delta AB | 1.56697 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00294 | 1 |
Exp 36h | 0.87405 | 0.699 |
Exp 60h | 0.82067 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99801 | 1 |
Var 0h | 1.45392 | 0.325 |
Var 12h I row2-row1 | 0.96632 | 0.948 |
Var 12h NI row2-row1 | 1.48306 | 0.235 |
Var 36h I row2-row1 | 1.76071 | 0.908 |
Var 36h NI row2-row1 | 0.8317 | 0.706 |
Var 60h I row2-row1 | 0.68753 | |
Var 60h NI row2-row1 | 0.81918 | 0.756 |
Time course 0hI-0hNI | 0.91455 | 0.423 |
Time course 12hI-12hNI | 0.99523 | 1 |
Time course 36hI-36hNI | 1.38538 | 0.218 |
Time course 60hI-60hNI | 1.09392 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9255 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.49376 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.14043 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16411 | 0.17 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02975 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98665 | 1 |
Manapal/WT (break) | 1.11685 | 0.14 |
Manapal/WT (red) | 1.07355 | 1 |
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