Expression of 1-1-1.3.20.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75661 | 0.187 |
27DAP/17DAP | 0.9539 | 0.851 |
39DAP/27DAP | 1.12128 | 0.922 |
41DAP/39DAP | 1.19522 | 0.742 |
42DAP/41DAP | 0.9412 | 1 |
43DAP/42DAP | 1.25162 | 0.974 |
47DAP/43DAP | 3.75269 | 0.156 |
52DAP/47DAP | 1.2923 | 0.543 |
57DAP/52DAP | 1.13884 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88361 | 0.074 |
17DAP/reference | 1.13338 | 0.041 |
27DAP/reference | 1.02041 | 0.759 |
39DAP/reference | 1.02642 | 0.654 |
41DAP/reference | 1.07313 | 0.111 |
42DAP/reference | 0.86755 | 0.007 |
43DAP/reference | 1.02719 | 0.596 |
47DAP/reference | 0.98387 | 0.473 |
52DAP/reference | 0.78669 | 0.019 |
57DAP/reference | 0.86745 | 0.054 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7877 | 0.388 |
27DAP/17DAP | 1.16964 | 0.604 |
39DAP/27DAP | 0.67519 | 0.191 |
41DAP/39DAP | 1.57563 | 0.705 |
42DAP/41DAP | 0.78863 | 0.356 |
43DAP/42DAP | 1.68937 | 0.382 |
47DAP/43DAP | 1.1261 | 0.897 |
52DAP/47DAP | 1.0904 | 0.826 |
57DAP/52DAP | 0.86811 | 0.415 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92778 | 0.296 |
17DAP/reference | 0.9871 | 0.518 |
27DAP/reference | 0.79184 | 0.076 |
39DAP/reference | 1.01984 | 0.745 |
41DAP/reference | 0.78455 | 0.098 |
42DAP/reference | 0.91399 | 0.289 |
43DAP/reference | 1.00671 | 0.608 |
47DAP/reference | 0.97976 | 0.671 |
52DAP/reference | 0.74426 | 0.024 |
57DAP/reference | 0.95999 | 0.367 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00738 | 0.97 |
17DAP/reference | 0.86595 | 0.032 |
27DAP/reference | 0.81283 | 0.084 |
39DAP/reference | 0.79621 | 0.036 |
41DAP/reference | 0.85849 | 0.074 |
42DAP/reference | 0.82095 | 0.042 |
43DAP/reference | 0.92799 | 0.314 |
47DAP/reference | 0.94894 | 0.221 |
52DAP/reference | 0.93683 | 0.072 |
57DAP/reference | 0.9588 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79035 | 0.047 |
17DAP/reference | 0.90135 | 0.328 |
27DAP/reference | 0.94721 | 0.319 |
39DAP/reference | 0.87568 | 0.031 |
41DAP/reference | 0.74347 | 0.132 |
42DAP/reference | 0.73657 | 0.049 |
43DAP/reference | 0.73788 | 0.041 |
47DAP/reference | 0.97627 | 0.525 |
52DAP/reference | 1.95042 | 0.705 |
57DAP/reference | 0.65443 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08863 | 0.966 |
26DAP/20DAP | 0.73685 | 0.512 |
34DAP/26DAP | 2.25296 | 0.304 |
51DAP/34DAP | 1.12421 | 0.936 |
52DAP/51DAP | 0.78774 | |
53DAP/52DAP | 0.81527 | 0.505 |
55DAP/53DAP | 0.7001 | 0.417 |
57DAP/55DAP | 1.254 | 0.975 |
62DAP/57DAP | 1.13361 | 0.723 |
68DAP/62DAP | 1.05859 | 0.885 |
68DAP/14DAP | 0.88203 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.19734 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.0981 | 0.017 |
Immature Eggplant/Mature Eggplant | 3.5371 | 0.528 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96261 | 0.934 |
1-1-2/M82 | 0.94691 | 0.958 |
12-2/M82 | 0.97628 | 1 |
12-4/M82 | 1.18022 | |
1-3/M82 | 0.78302 | 0.378 |
2-1-1/M82 | 1.34958 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04019 | 1 |
3-2/M82 | 1.05749 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.98131 | |
4-3-2/M82 | 1.04391 | |
4-3/M82 | 0.76173 | 0.72 |
5-3/M82 | 1.01199 | 1 |
6-2/M82 | 0.98869 | 1 |
6-3/M82 | 1.08528 | 1 |
7-1/M82 | 1.21091 | |
7-2/M82 | 1.02171 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.04132 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.10572 | 1 |
IL12-4/WTpooled | 1.03003 | 0.891 |
IL1-4/WTpooled | 1.21257 | 1 |
WT/WTpooled | 1.01054 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01646 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.04393 | 1 |
DC3000/delta hrp 24h | 1.08397 | 0.397 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 3.88473 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.81384 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 1.90816 | |
Var 36h I row2-row1 | 1.21618 | 1 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.1918 | 0.904 |
Time course 0hI-0hNI | 1.06059 | 0.942 |
Time course 12hI-12hNI | 1.12168 | 0.684 |
Time course 36hI-36hNI | 1.13044 | 0.718 |
Time course 60hI-60hNI | 3.22865 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 5.52132 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.63845 | 1 |
transgenic ySAMdc/azygous control (red) | 3.06461 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96749 | 0.343 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02575 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.34122 | 0.14 |
Manapal/WT (break) | 1.25318 | 0.126 |
Manapal/WT (red) | 1.04964 | 1 |
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