Expression of 1-1-1.3.20.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.756610.187
27DAP/17DAP0.95390.851
39DAP/27DAP1.121280.922
41DAP/39DAP1.195220.742
42DAP/41DAP0.94121
43DAP/42DAP1.251620.974
47DAP/43DAP3.752690.156
52DAP/47DAP1.29230.543
57DAP/52DAP1.138840.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.883610.074
17DAP/reference1.133380.041
27DAP/reference1.020410.759
39DAP/reference1.026420.654
41DAP/reference1.073130.111
42DAP/reference0.867550.007
43DAP/reference1.027190.596
47DAP/reference0.983870.473
52DAP/reference0.786690.019
57DAP/reference0.867450.054

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.78770.388
27DAP/17DAP1.169640.604
39DAP/27DAP0.675190.191
41DAP/39DAP1.575630.705
42DAP/41DAP0.788630.356
43DAP/42DAP1.689370.382
47DAP/43DAP1.12610.897
52DAP/47DAP1.09040.826
57DAP/52DAP0.868110.415
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927780.296
17DAP/reference0.98710.518
27DAP/reference0.791840.076
39DAP/reference1.019840.745
41DAP/reference0.784550.098
42DAP/reference0.913990.289
43DAP/reference1.006710.608
47DAP/reference0.979760.671
52DAP/reference0.744260.024
57DAP/reference0.959990.367

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007380.97
17DAP/reference0.865950.032
27DAP/reference0.812830.084
39DAP/reference0.796210.036
41DAP/reference0.858490.074
42DAP/reference0.820950.042
43DAP/reference0.927990.314
47DAP/reference0.948940.221
52DAP/reference0.936830.072
57DAP/reference0.95880.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.790350.047
17DAP/reference0.901350.328
27DAP/reference0.947210.319
39DAP/reference0.875680.031
41DAP/reference0.743470.132
42DAP/reference0.736570.049
43DAP/reference0.737880.041
47DAP/reference0.976270.525
52DAP/reference1.950420.705
57DAP/reference0.654430.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.088630.966
26DAP/20DAP0.736850.512
34DAP/26DAP2.252960.304
51DAP/34DAP1.124210.936
52DAP/51DAP0.78774
53DAP/52DAP0.815270.505
55DAP/53DAP0.70010.417
57DAP/55DAP1.2540.975
62DAP/57DAP1.133610.723
68DAP/62DAP1.058590.885
68DAP/14DAP0.882031

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.197340.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.09810.017
Immature Eggplant/Mature Eggplant3.53710.528
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.962610.934
1-1-2/M820.946910.958
12-2/M820.976281
12-4/M821.18022
1-3/M820.783020.378
2-1-1/M821.349580.764
2-1/M82N/AN/A
2-6/M821.040191
3-2/M821.05749
4-1-1/M82N/AN/A
4-1/M820.98131
4-3-2/M821.04391
4-3/M820.761730.72
5-3/M821.011991
6-2/M820.988691
6-3/M821.085281
7-1/M821.21091
7-2/M821.021711
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.041321
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.105721
IL12-4/WTpooled1.030030.891
IL1-4/WTpooled1.212571
WT/WTpooled1.010541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016461
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.043931
DC3000/delta hrp 24h1.083970.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB3.88473
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.81384
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row11.90816
Var 36h I row2-row11.216181
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.19180.904
Time course 0hI-0hNI1.060590.942
Time course 12hI-12hNI1.121680.684
Time course 36hI-36hNI1.130440.718
Time course 60hI-60hNI3.228650.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)5.521321
transgenic ySAMdc/azygous control (breaker)1.638451
transgenic ySAMdc/azygous control (red)3.064610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.967490.343

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.025751

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.341220.14
Manapal/WT (break)1.253180.126
Manapal/WT (red)1.049641