Expression of 1-1-1.3.20.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11603 | 0.867 |
27DAP/17DAP | 1.12833 | 0.849 |
39DAP/27DAP | 0.96559 | 0.749 |
41DAP/39DAP | 1.21649 | 0.96 |
42DAP/41DAP | 1.11437 | 0.912 |
43DAP/42DAP | 1.3755 | 0.954 |
47DAP/43DAP | 1.22871 | 0.513 |
52DAP/47DAP | 0.89128 | 0.688 |
57DAP/52DAP | 1.10123 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8326 | 0.025 |
17DAP/reference | 1.0132 | 0.787 |
27DAP/reference | 1.00832 | 1 |
39DAP/reference | 0.94212 | 0.298 |
41DAP/reference | 1.00092 | 1 |
42DAP/reference | 1.01409 | 1 |
43DAP/reference | 0.92584 | 0.148 |
47DAP/reference | 1.1649 | 0.046 |
52DAP/reference | 1.06814 | 0.607 |
57DAP/reference | 1.01076 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70478 | 0.045 |
27DAP/17DAP | 1.28349 | 0.724 |
39DAP/27DAP | 1.22781 | 0.512 |
41DAP/39DAP | 1.12013 | 1 |
42DAP/41DAP | 0.89994 | 0.666 |
43DAP/42DAP | 0.86882 | 0.597 |
47DAP/43DAP | 1.26326 | 0.779 |
52DAP/47DAP | 1.39137 | 0.441 |
57DAP/52DAP | 0.91118 | 0.608 |
57DAP/7DAP | 2.16556 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11328 | 0.676 |
17DAP/reference | 1.49802 | 0.006 |
27DAP/reference | 1.38283 | 0.008 |
39DAP/reference | 1.37345 | 0.04 |
41DAP/reference | 1.44723 | 0.014 |
42DAP/reference | 1.27892 | 0.03 |
43DAP/reference | 1.55255 | 0.012 |
47DAP/reference | 1.1349 | 0.36 |
52DAP/reference | 1.31851 | 0.038 |
57DAP/reference | 1.22614 | 0.033 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90485 | 0.306 |
17DAP/reference | 0.76011 | 0.01 |
27DAP/reference | 0.8197 | 0.119 |
39DAP/reference | 0.71404 | 0.018 |
41DAP/reference | 0.93972 | 0.212 |
42DAP/reference | 0.7948 | 0.037 |
43DAP/reference | 0.87978 | 0.217 |
47DAP/reference | 1.28468 | 0.112 |
52DAP/reference | 0.87821 | 0.072 |
57DAP/reference | 1.02508 | 0.724 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3291 | 0.032 |
17DAP/reference | 0.9603 | 0.579 |
27DAP/reference | 1.43581 | 0.039 |
39DAP/reference | 1.31498 | 0.034 |
41DAP/reference | 1.29963 | 0.009 |
42DAP/reference | 1.12622 | 0.459 |
43DAP/reference | 1.29157 | 0.369 |
47DAP/reference | 1.02419 | 0.626 |
52DAP/reference | 1.44105 | 0.081 |
57DAP/reference | 1.19944 | 0.56 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11653 | 1 |
26DAP/20DAP | 1.02366 | 1 |
34DAP/26DAP | 1.4008 | 0.819 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.07725 | 1 |
53DAP/52DAP | 0.67132 | 0.498 |
55DAP/53DAP | 1.70554 | 0.046 |
57DAP/55DAP | 1.02124 | 1 |
62DAP/57DAP | 1.34241 | 0.115 |
68DAP/62DAP | 0.97455 | 0.863 |
68DAP/14DAP | 1.07647 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.19549 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.04666 | 0.039 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 12.3823 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.01596 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.56433 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.22371 | |
1-1-2/M82 | 0.95794 | 1 |
12-2/M82 | 1.34671 | 1 |
12-4/M82 | 0.20506 | |
1-3/M82 | 3.88874 | 0.479 |
2-1-1/M82 | 0.84436 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 5.31994 | 0.329 |
3-2/M82 | 0.67042 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 4.1804 | |
4-3/M82 | 6.11052 | |
5-3/M82 | 0.73652 | 0.447 |
6-2/M82 | 2.09582 | |
6-3/M82 | 1.61405 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 5.55809 | 0.263 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.94862 | 1 |
IL2-6/WTpooled | 0.7329 | 1 |
IL7-5/WTpooled | 1.33552 | 0.792 |
IL7-3/WTpooled | 1.16576 | 1 |
IL12-4/WTpooled | 0.85421 | 0.71 |
IL1-4/WTpooled | 1.20898 | 0.426 |
WT/WTpooled | 1.06382 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.76522 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.32676 | 0.921 |
DC3000/delta hrp 6h | 1.70804 | 0.672 |
DC3000/delta hrp 12h | 1.31399 | 1 |
DC3000/delta hrp 24h | 1.01891 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.71532 | |
DC3000 delta B/DC3000 delta AB | 3.51187 | 0.027 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1178 | 1 |
Exp 36h | 2.00873 | 0.489 |
Exp 60h | 1.24816 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02724 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.0395 | 1 |
Var 12h NI row2-row1 | 2.93684 | 0.281 |
Var 36h I row2-row1 | 1.26178 | 1 |
Var 36h NI row2-row1 | 0.71604 | 0.549 |
Var 60h I row2-row1 | 0.68939 | 0.285 |
Var 60h NI row2-row1 | 0.467 | 0.318 |
Time course 0hI-0hNI | 1.11024 | 0.719 |
Time course 12hI-12hNI | 2.36325 | 0.059 |
Time course 36hI-36hNI | 6.39799 | 0.004 |
Time course 60hI-60hNI | 22.6262 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87069 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 0.35645 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.95562 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11295 | 0.556 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.445 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 14.0765 | 0.093 |
Manapal/WT (break) | 5.78871 | 0.183 |
Manapal/WT (red) | 8.55941 | 0.15 |
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