Expression of 1-1-1.3.20.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.116030.867
27DAP/17DAP1.128330.849
39DAP/27DAP0.965590.749
41DAP/39DAP1.216490.96
42DAP/41DAP1.114370.912
43DAP/42DAP1.37550.954
47DAP/43DAP1.228710.513
52DAP/47DAP0.891280.688
57DAP/52DAP1.101230.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.83260.025
17DAP/reference1.01320.787
27DAP/reference1.008321
39DAP/reference0.942120.298
41DAP/reference1.000921
42DAP/reference1.014091
43DAP/reference0.925840.148
47DAP/reference1.16490.046
52DAP/reference1.068140.607
57DAP/reference1.010761

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.704780.045
27DAP/17DAP1.283490.724
39DAP/27DAP1.227810.512
41DAP/39DAP1.120131
42DAP/41DAP0.899940.666
43DAP/42DAP0.868820.597
47DAP/43DAP1.263260.779
52DAP/47DAP1.391370.441
57DAP/52DAP0.911180.608
57DAP/7DAP2.165561

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.113280.676
17DAP/reference1.498020.006
27DAP/reference1.382830.008
39DAP/reference1.373450.04
41DAP/reference1.447230.014
42DAP/reference1.278920.03
43DAP/reference1.552550.012
47DAP/reference1.13490.36
52DAP/reference1.318510.038
57DAP/reference1.226140.033

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.904850.306
17DAP/reference0.760110.01
27DAP/reference0.81970.119
39DAP/reference0.714040.018
41DAP/reference0.939720.212
42DAP/reference0.79480.037
43DAP/reference0.879780.217
47DAP/reference1.284680.112
52DAP/reference0.878210.072
57DAP/reference1.025080.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.32910.032
17DAP/reference0.96030.579
27DAP/reference1.435810.039
39DAP/reference1.314980.034
41DAP/reference1.299630.009
42DAP/reference1.126220.459
43DAP/reference1.291570.369
47DAP/reference1.024190.626
52DAP/reference1.441050.081
57DAP/reference1.199440.56

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.116531
26DAP/20DAP1.023661
34DAP/26DAP1.40080.819
51DAP/34DAPN/AN/A
52DAP/51DAP1.077251
53DAP/52DAP0.671320.498
55DAP/53DAP1.705540.046
57DAP/55DAP1.021241
62DAP/57DAP1.342410.115
68DAP/62DAP0.974550.863
68DAP/14DAP1.076470.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.195490.026

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.046660.039
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant12.38230.05
Ripe Pepper/Ripe Tomato2.015960.258
Mature Eggplant/Ripe Tomato1.564331

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.22371
1-1-2/M820.957941
12-2/M821.346711
12-4/M820.20506
1-3/M823.888740.479
2-1-1/M820.84436
2-1/M82N/AN/A
2-6/M825.319940.329
3-2/M820.67042
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M824.1804
4-3/M826.11052
5-3/M820.736520.447
6-2/M822.09582
6-3/M821.614051
7-1/M82N/AN/A
7-2/M825.558090.263
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.948621
IL2-6/WTpooled0.73291
IL7-5/WTpooled1.335520.792
IL7-3/WTpooled1.165761
IL12-4/WTpooled0.854210.71
IL1-4/WTpooled1.208980.426
WT/WTpooled1.063821

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.765220.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.326760.921
DC3000/delta hrp 6h1.708040.672
DC3000/delta hrp 12h1.313991
DC3000/delta hrp 24h1.018911

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.71532
DC3000 delta B/DC3000 delta AB3.511870.027

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.11781
Exp 36h2.008730.489
Exp 60h1.248161

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.027241
Var 0hN/AN/A
Var 12h I row2-row11.03951
Var 12h NI row2-row12.936840.281
Var 36h I row2-row11.261781
Var 36h NI row2-row10.716040.549
Var 60h I row2-row10.689390.285
Var 60h NI row2-row10.4670.318
Time course 0hI-0hNI1.110240.719
Time course 12hI-12hNI2.363250.059
Time course 36hI-36hNI6.397990.004
Time course 60hI-60hNI22.62620.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.870690.529
transgenic ySAMdc/azygous control (breaker)0.356450.131
transgenic ySAMdc/azygous control (red)0.955621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.112950.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.4450.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)14.07650.093
Manapal/WT (break)5.788710.183
Manapal/WT (red)8.559410.15