Expression of 1-1-1.3.3.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951870.713
27DAP/17DAP0.835390.523
39DAP/27DAP0.815030.495
41DAP/39DAP0.938140.772
42DAP/41DAP1.192460.755
43DAP/42DAP1.400890.787
47DAP/43DAP0.88290.599
52DAP/47DAP1.059070.957
57DAP/52DAP1.173780.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.955630.578
17DAP/reference1.18820.026
27DAP/reference0.955090.683
39DAP/reference0.918820.159
41DAP/reference1.008810.855
42DAP/reference1.083390.055
43DAP/reference0.780230.429
47DAP/reference0.974570.392
52DAP/reference0.831090.195
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.291410.176
27DAP/17DAP0.927260.39
39DAP/27DAP0.732960.089
41DAP/39DAP1.046980.895
42DAP/41DAP1.052510.893
43DAP/42DAP0.895250.415
47DAP/43DAP1.008281
52DAP/47DAP0.977310.905
57DAP/52DAP1.121810.483
57DAP/7DAP0.951530.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.468920.027
17DAP/reference0.695540.094
27DAP/reference0.462090.01
39DAP/reference0.886830.073
41DAP/reference0.94060.394
42DAP/reference0.7760.123
43DAP/reference0.993240.555
47DAP/reference1.087410.604
52DAP/reference1.118120.375
57DAP/reference1.070740.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.202160.294
17DAP/reference1.091250.385
27DAP/reference0.990420.642
39DAP/reference0.759610.156
41DAP/reference0.881060.058
42DAP/reference0.828960.039
43DAP/reference0.858480.269
47DAP/reference0.983020.527
52DAP/reference0.940910.239
57DAP/reference0.975770.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.144140.059
17DAP/reference1.090690.934
27DAP/reference0.925320.566
39DAP/reference0.622220.179
41DAP/reference0.983180.754
42DAP/reference0.893150.552
43DAP/reference0.920070.484
47DAP/reference0.84740.022
52DAP/reference0.699630.066
57DAP/reference0.727780.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.010941
26DAP/20DAP1.186090.415
34DAP/26DAP0.974950.972
51DAP/34DAP1.176790.177
52DAP/51DAP0.975781
53DAP/52DAP0.876630.409
55DAP/53DAP0.998520.838
57DAP/55DAP1.087510.975
62DAP/57DAP1.061440.935
68DAP/62DAP0.833590.722
68DAP/14DAP0.641970.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.59810.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.030580.058
Mature Green Tomato/Ripe Tomato2.675720.106
Immature Eggplant/Mature Eggplant0.358510.062
Ripe Pepper/Ripe Tomato1.28997
Mature Eggplant/Ripe Tomato1.85308

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.8820.883
1-1-2/M821.038230.977
12-2/M820.899130.955
12-4/M820.72354
1-3/M82N/AN/A
2-1-1/M820.817980.565
2-1/M820.70388
2-6/M821.127850.505
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.02876
5-3/M821.011831
6-2/M820.917450.497
6-3/M821.010121
7-1/M82N/AN/A
7-2/M820.999091
9-3-2/M821.32066

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.076650.277
IL2-6/WTpooled1.016831
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.232131
IL12-4/WTpooled0.866090.71
IL1-4/WTpooled1.566191
WT/WTpooled1.084840.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.962451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.931590.941
DC3000/delta hrp 6h0.893840.95
DC3000/delta hrp 12h0.995261
DC3000/delta hrp 24h0.422350.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.563550.117
DC3000 delta B/DC3000 delta AB0.525910.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.830931
Exp 36h0.784770.504
Exp 60h0.52530.258

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.467080.594
Var 12h I row2-row11.69061
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.923340.362
transgenic ySAMdc/azygous control (breaker)1.090081
transgenic ySAMdc/azygous control (red)1.003061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.981190.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.945650.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.598980.088
Manapal/WT (break)1.139291
Manapal/WT (red)1.133470.413