Expression of 1-1-1.3.3.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95187 | 0.713 |
27DAP/17DAP | 0.83539 | 0.523 |
39DAP/27DAP | 0.81503 | 0.495 |
41DAP/39DAP | 0.93814 | 0.772 |
42DAP/41DAP | 1.19246 | 0.755 |
43DAP/42DAP | 1.40089 | 0.787 |
47DAP/43DAP | 0.8829 | 0.599 |
52DAP/47DAP | 1.05907 | 0.957 |
57DAP/52DAP | 1.17378 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95563 | 0.578 |
17DAP/reference | 1.1882 | 0.026 |
27DAP/reference | 0.95509 | 0.683 |
39DAP/reference | 0.91882 | 0.159 |
41DAP/reference | 1.00881 | 0.855 |
42DAP/reference | 1.08339 | 0.055 |
43DAP/reference | 0.78023 | 0.429 |
47DAP/reference | 0.97457 | 0.392 |
52DAP/reference | 0.83109 | 0.195 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29141 | 0.176 |
27DAP/17DAP | 0.92726 | 0.39 |
39DAP/27DAP | 0.73296 | 0.089 |
41DAP/39DAP | 1.04698 | 0.895 |
42DAP/41DAP | 1.05251 | 0.893 |
43DAP/42DAP | 0.89525 | 0.415 |
47DAP/43DAP | 1.00828 | 1 |
52DAP/47DAP | 0.97731 | 0.905 |
57DAP/52DAP | 1.12181 | 0.483 |
57DAP/7DAP | 0.95153 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46892 | 0.027 |
17DAP/reference | 0.69554 | 0.094 |
27DAP/reference | 0.46209 | 0.01 |
39DAP/reference | 0.88683 | 0.073 |
41DAP/reference | 0.9406 | 0.394 |
42DAP/reference | 0.776 | 0.123 |
43DAP/reference | 0.99324 | 0.555 |
47DAP/reference | 1.08741 | 0.604 |
52DAP/reference | 1.11812 | 0.375 |
57DAP/reference | 1.07074 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20216 | 0.294 |
17DAP/reference | 1.09125 | 0.385 |
27DAP/reference | 0.99042 | 0.642 |
39DAP/reference | 0.75961 | 0.156 |
41DAP/reference | 0.88106 | 0.058 |
42DAP/reference | 0.82896 | 0.039 |
43DAP/reference | 0.85848 | 0.269 |
47DAP/reference | 0.98302 | 0.527 |
52DAP/reference | 0.94091 | 0.239 |
57DAP/reference | 0.97577 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14414 | 0.059 |
17DAP/reference | 1.09069 | 0.934 |
27DAP/reference | 0.92532 | 0.566 |
39DAP/reference | 0.62222 | 0.179 |
41DAP/reference | 0.98318 | 0.754 |
42DAP/reference | 0.89315 | 0.552 |
43DAP/reference | 0.92007 | 0.484 |
47DAP/reference | 0.8474 | 0.022 |
52DAP/reference | 0.69963 | 0.066 |
57DAP/reference | 0.72778 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01094 | 1 |
26DAP/20DAP | 1.18609 | 0.415 |
34DAP/26DAP | 0.97495 | 0.972 |
51DAP/34DAP | 1.17679 | 0.177 |
52DAP/51DAP | 0.97578 | 1 |
53DAP/52DAP | 0.87663 | 0.409 |
55DAP/53DAP | 0.99852 | 0.838 |
57DAP/55DAP | 1.08751 | 0.975 |
62DAP/57DAP | 1.06144 | 0.935 |
68DAP/62DAP | 0.83359 | 0.722 |
68DAP/14DAP | 0.64197 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.5981 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.03058 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.67572 | 0.106 |
Immature Eggplant/Mature Eggplant | 0.35851 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.28997 | |
Mature Eggplant/Ripe Tomato | 1.85308 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.882 | 0.883 |
1-1-2/M82 | 1.03823 | 0.977 |
12-2/M82 | 0.89913 | 0.955 |
12-4/M82 | 0.72354 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.81798 | 0.565 |
2-1/M82 | 0.70388 | |
2-6/M82 | 1.12785 | 0.505 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.02876 | |
5-3/M82 | 1.01183 | 1 |
6-2/M82 | 0.91745 | 0.497 |
6-3/M82 | 1.01012 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.99909 | 1 |
9-3-2/M82 | 1.32066 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.07665 | 0.277 |
IL2-6/WTpooled | 1.01683 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.23213 | 1 |
IL12-4/WTpooled | 0.86609 | 0.71 |
IL1-4/WTpooled | 1.56619 | 1 |
WT/WTpooled | 1.08484 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96245 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93159 | 0.941 |
DC3000/delta hrp 6h | 0.89384 | 0.95 |
DC3000/delta hrp 12h | 0.99526 | 1 |
DC3000/delta hrp 24h | 0.42235 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.56355 | 0.117 |
DC3000 delta B/DC3000 delta AB | 0.52591 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.83093 | 1 |
Exp 36h | 0.78477 | 0.504 |
Exp 60h | 0.5253 | 0.258 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.46708 | 0.594 |
Var 12h I row2-row1 | 1.69061 | |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92334 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.09008 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00306 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98119 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.94565 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.59898 | 0.088 |
Manapal/WT (break) | 1.13929 | 1 |
Manapal/WT (red) | 1.13347 | 0.413 |
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