Expression of 1-1-1.3.3.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000350.858
27DAP/17DAP1.034480.984
39DAP/27DAP1.06831
41DAP/39DAP1.161470.85
42DAP/41DAP1.248420.912
43DAP/42DAP0.811560.708
47DAP/43DAP1.430170.746
52DAP/47DAP1.938460.198
57DAP/52DAP1.058820.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.800580.145
17DAP/reference0.625160.009
27DAP/reference0.748790.17
39DAP/reference0.654710.011
41DAP/reference0.553470.013
42DAP/reference0.734610.001
43DAP/reference1.080.82
47DAP/reference0.822950.055
52DAP/reference1.042960.121
57DAP/reference0.51657

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.996710.871
27DAP/17DAP1.105840.826
39DAP/27DAP0.949180.607
41DAP/39DAP1.000411
42DAP/41DAP1.00340.913
43DAP/42DAP1.03290.699
47DAP/43DAP0.906450.439
52DAP/47DAP1.542990.106
57DAP/52DAP1.456550.093
57DAP/7DAP1.230211

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.880550.146
17DAP/reference0.933590.019
27DAP/reference0.89410.011
39DAP/reference0.882110.039
41DAP/reference0.903540.016
42DAP/reference0.903540.017
43DAP/reference0.93850.175
47DAP/reference0.976430.671
52DAP/reference0.830870.01
57DAP/reference0.947580.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882230.124
17DAP/reference0.852120.049
27DAP/reference0.996790.711
39DAP/reference1.00780.702
41DAP/reference1.032271
42DAP/reference0.966040.392
43DAP/reference0.737670.062
47DAP/reference0.787410.015
52DAP/reference0.890260.078
57DAP/reference0.792630.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.870120.169
17DAP/reference0.959140.636
27DAP/reference1.026380.621
39DAP/reference0.91690.031
41DAP/reference0.954640.331
42DAP/reference1.135070.789
43DAP/reference1.142570.515
47DAP/reference0.955430.421
52DAP/reference0.881360.184
57DAP/reference1.652430.039

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.126870.966
26DAP/20DAP1.13810.941
34DAP/26DAP2.006650.819
51DAP/34DAP0.883020.563
52DAP/51DAP2.296560.051
53DAP/52DAP0.791140.087
55DAP/53DAP1.628040.039
57DAP/55DAP0.566050.066
62DAP/57DAP1.075450.445
68DAP/62DAP1.901650.398
68DAP/14DAP2.768470.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.652270.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.779780.234
Mature Green Tomato/Ripe Tomato0.669060.017
Immature Eggplant/Mature Eggplant0.676140.077
Ripe Pepper/Ripe Tomato2.294140.258
Mature Eggplant/Ripe Tomato0.672640.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.754790.548
1-1-2/M821.115331
12-2/M820.949810.955
12-4/M820.797480.319
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.006121
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.44686
5-3/M821.078311
6-2/M82N/AN/A
6-3/M821.036151
7-1/M82N/AN/A
7-2/M820.923760.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.582610.243
IL2-6/WTpooled0.968011
IL7-5/WTpooled0.988851
IL7-3/WTpooled0.483230.294
IL12-4/WTpooled0.913971
IL1-4/WTpooled0.768120.444
WT/WTpooled1.06961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.01171

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.012330.921
DC3000/delta hrp 6h1.030031
DC3000/delta hrp 12h1.094191
DC3000/delta hrp 24h0.97010.818

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.187770.229
DC3000 delta B/DC3000 delta AB1.165710.321

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.897160.213
Exp 36h0.963270.943
Exp 60h1.163571

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.81074
Var 0h0.937030.98
Var 12h I row2-row10.79350.467
Var 12h NI row2-row11.229120.649
Var 36h I row2-row10.914451
Var 36h NI row2-row10.988140.852
Var 60h I row2-row10.885680.832
Var 60h NI row2-row10.941070.977
Time course 0hI-0hNI1.018680.852
Time course 12hI-12hNI1.000951
Time course 36hI-36hNI1.078880.063
Time course 60hI-60hNI0.832310.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.016370.455
transgenic ySAMdc/azygous control (breaker)1.952330.172
transgenic ySAMdc/azygous control (red)1.237010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.043930.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.170810.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.109541
Manapal/WT (break)1.393840.381
Manapal/WT (red)1.689830.126