Expression of 1-1-1.3.3.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00035 | 0.858 |
27DAP/17DAP | 1.03448 | 0.984 |
39DAP/27DAP | 1.0683 | 1 |
41DAP/39DAP | 1.16147 | 0.85 |
42DAP/41DAP | 1.24842 | 0.912 |
43DAP/42DAP | 0.81156 | 0.708 |
47DAP/43DAP | 1.43017 | 0.746 |
52DAP/47DAP | 1.93846 | 0.198 |
57DAP/52DAP | 1.05882 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80058 | 0.145 |
17DAP/reference | 0.62516 | 0.009 |
27DAP/reference | 0.74879 | 0.17 |
39DAP/reference | 0.65471 | 0.011 |
41DAP/reference | 0.55347 | 0.013 |
42DAP/reference | 0.73461 | 0.001 |
43DAP/reference | 1.08 | 0.82 |
47DAP/reference | 0.82295 | 0.055 |
52DAP/reference | 1.04296 | 0.121 |
57DAP/reference | 0.51657 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99671 | 0.871 |
27DAP/17DAP | 1.10584 | 0.826 |
39DAP/27DAP | 0.94918 | 0.607 |
41DAP/39DAP | 1.00041 | 1 |
42DAP/41DAP | 1.0034 | 0.913 |
43DAP/42DAP | 1.0329 | 0.699 |
47DAP/43DAP | 0.90645 | 0.439 |
52DAP/47DAP | 1.54299 | 0.106 |
57DAP/52DAP | 1.45655 | 0.093 |
57DAP/7DAP | 1.23021 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88055 | 0.146 |
17DAP/reference | 0.93359 | 0.019 |
27DAP/reference | 0.8941 | 0.011 |
39DAP/reference | 0.88211 | 0.039 |
41DAP/reference | 0.90354 | 0.016 |
42DAP/reference | 0.90354 | 0.017 |
43DAP/reference | 0.9385 | 0.175 |
47DAP/reference | 0.97643 | 0.671 |
52DAP/reference | 0.83087 | 0.01 |
57DAP/reference | 0.94758 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88223 | 0.124 |
17DAP/reference | 0.85212 | 0.049 |
27DAP/reference | 0.99679 | 0.711 |
39DAP/reference | 1.0078 | 0.702 |
41DAP/reference | 1.03227 | 1 |
42DAP/reference | 0.96604 | 0.392 |
43DAP/reference | 0.73767 | 0.062 |
47DAP/reference | 0.78741 | 0.015 |
52DAP/reference | 0.89026 | 0.078 |
57DAP/reference | 0.79263 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87012 | 0.169 |
17DAP/reference | 0.95914 | 0.636 |
27DAP/reference | 1.02638 | 0.621 |
39DAP/reference | 0.9169 | 0.031 |
41DAP/reference | 0.95464 | 0.331 |
42DAP/reference | 1.13507 | 0.789 |
43DAP/reference | 1.14257 | 0.515 |
47DAP/reference | 0.95543 | 0.421 |
52DAP/reference | 0.88136 | 0.184 |
57DAP/reference | 1.65243 | 0.039 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12687 | 0.966 |
26DAP/20DAP | 1.1381 | 0.941 |
34DAP/26DAP | 2.00665 | 0.819 |
51DAP/34DAP | 0.88302 | 0.563 |
52DAP/51DAP | 2.29656 | 0.051 |
53DAP/52DAP | 0.79114 | 0.087 |
55DAP/53DAP | 1.62804 | 0.039 |
57DAP/55DAP | 0.56605 | 0.066 |
62DAP/57DAP | 1.07545 | 0.445 |
68DAP/62DAP | 1.90165 | 0.398 |
68DAP/14DAP | 2.76847 | 0.016 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.65227 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77978 | 0.234 |
Mature Green Tomato/Ripe Tomato | 0.66906 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.67614 | 0.077 |
Ripe Pepper/Ripe Tomato | 2.29414 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.67264 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75479 | 0.548 |
1-1-2/M82 | 1.11533 | 1 |
12-2/M82 | 0.94981 | 0.955 |
12-4/M82 | 0.79748 | 0.319 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00612 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.44686 | |
5-3/M82 | 1.07831 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.03615 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.92376 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.58261 | 0.243 |
IL2-6/WTpooled | 0.96801 | 1 |
IL7-5/WTpooled | 0.98885 | 1 |
IL7-3/WTpooled | 0.48323 | 0.294 |
IL12-4/WTpooled | 0.91397 | 1 |
IL1-4/WTpooled | 0.76812 | 0.444 |
WT/WTpooled | 1.0696 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0117 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01233 | 0.921 |
DC3000/delta hrp 6h | 1.03003 | 1 |
DC3000/delta hrp 12h | 1.09419 | 1 |
DC3000/delta hrp 24h | 0.9701 | 0.818 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.18777 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.16571 | 0.321 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89716 | 0.213 |
Exp 36h | 0.96327 | 0.943 |
Exp 60h | 1.16357 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.81074 | |
Var 0h | 0.93703 | 0.98 |
Var 12h I row2-row1 | 0.7935 | 0.467 |
Var 12h NI row2-row1 | 1.22912 | 0.649 |
Var 36h I row2-row1 | 0.91445 | 1 |
Var 36h NI row2-row1 | 0.98814 | 0.852 |
Var 60h I row2-row1 | 0.88568 | 0.832 |
Var 60h NI row2-row1 | 0.94107 | 0.977 |
Time course 0hI-0hNI | 1.01868 | 0.852 |
Time course 12hI-12hNI | 1.00095 | 1 |
Time course 36hI-36hNI | 1.07888 | 0.063 |
Time course 60hI-60hNI | 0.83231 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01637 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 1.95233 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.23701 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04393 | 0.155 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.17081 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10954 | 1 |
Manapal/WT (break) | 1.39384 | 0.381 |
Manapal/WT (red) | 1.68983 | 0.126 |
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