Expression of 1-1-1.3.3.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.175590.997
27DAP/17DAP1.818560.783
39DAP/27DAP0.958630.631
41DAP/39DAP1.66470.735
42DAP/41DAP2.044210.595
43DAP/42DAP1.413191
47DAP/43DAP1.009450.701
52DAP/47DAP1.395780.902
57DAP/52DAP1.747690.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.353780.32
17DAP/reference1.627560.011
27DAP/reference1.422160.03
39DAP/reference1.056531
41DAP/reference1.613840.287
42DAP/reference0.59027
43DAP/reference1.56709
47DAP/referenceN/AN/A
52DAP/reference1.04546
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP0.62008
39DAP/27DAP0.910990.668
41DAP/39DAPN/AN/A
42DAP/41DAP1.065850.976
43DAP/42DAP1.802530.664
47DAP/43DAP0.8462
52DAP/47DAP0.983460.902
57DAP/52DAP1.45443
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.984690.682
17DAP/reference1.309950.18
27DAP/reference1.381880.107
39DAP/reference1.537640.056
41DAP/reference1.433440.013
42DAP/reference1.391210.132
43DAP/reference1.256350.015
47DAP/reference1.36330.079
52DAP/reference1.226290.013
57DAP/reference1.225290.061

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.898440.548
17DAP/reference1.222880.035
27DAP/reference1.07605
39DAP/reference1.373810.213
41DAP/reference1.09734
42DAP/reference1.61261
43DAP/reference1.511190.338
47DAP/reference1.214940.022
52DAP/reference1.451330.01
57DAP/reference2.072230.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.143850.691
17DAP/reference1.843360.14
27DAP/reference1.404160.115
39DAP/reference1.318190.285
41DAP/reference1.544660.01
42DAP/reference1.264460.065
43DAP/reference1.370040.066
47DAP/reference0.38675
52DAP/reference1.536480.081
57DAP/reference0.878

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.82730.787
26DAP/20DAP0.82199
34DAP/26DAPN/AN/A
51DAP/34DAP0.744190.311
52DAP/51DAP1.2390.068
53DAP/52DAP1.763570.171
55DAP/53DAP1.588720.991
57DAP/55DAP1.12212
62DAP/57DAP1.311540.047
68DAP/62DAPN/AN/A
68DAP/14DAP1.1165

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.524840.277
IL2-6/WTpooled1.127711
IL7-5/WTpooled1.649311
IL7-3/WTpooled1.116051
IL12-4/WTpooled0.827220.581
IL1-4/WTpooled1.355231
WT/WTpooled0.833451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.828190.333
Manapal/WT (red)N/AN/A