Expression of 1-1-1.3.3.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17559 | 0.997 |
27DAP/17DAP | 1.81856 | 0.783 |
39DAP/27DAP | 0.95863 | 0.631 |
41DAP/39DAP | 1.6647 | 0.735 |
42DAP/41DAP | 2.04421 | 0.595 |
43DAP/42DAP | 1.41319 | 1 |
47DAP/43DAP | 1.00945 | 0.701 |
52DAP/47DAP | 1.39578 | 0.902 |
57DAP/52DAP | 1.74769 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35378 | 0.32 |
17DAP/reference | 1.62756 | 0.011 |
27DAP/reference | 1.42216 | 0.03 |
39DAP/reference | 1.05653 | 1 |
41DAP/reference | 1.61384 | 0.287 |
42DAP/reference | 0.59027 | |
43DAP/reference | 1.56709 | |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.04546 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 0.62008 | |
39DAP/27DAP | 0.91099 | 0.668 |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 1.06585 | 0.976 |
43DAP/42DAP | 1.80253 | 0.664 |
47DAP/43DAP | 0.8462 | |
52DAP/47DAP | 0.98346 | 0.902 |
57DAP/52DAP | 1.45443 | |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98469 | 0.682 |
17DAP/reference | 1.30995 | 0.18 |
27DAP/reference | 1.38188 | 0.107 |
39DAP/reference | 1.53764 | 0.056 |
41DAP/reference | 1.43344 | 0.013 |
42DAP/reference | 1.39121 | 0.132 |
43DAP/reference | 1.25635 | 0.015 |
47DAP/reference | 1.3633 | 0.079 |
52DAP/reference | 1.22629 | 0.013 |
57DAP/reference | 1.22529 | 0.061 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89844 | 0.548 |
17DAP/reference | 1.22288 | 0.035 |
27DAP/reference | 1.07605 | |
39DAP/reference | 1.37381 | 0.213 |
41DAP/reference | 1.09734 | |
42DAP/reference | 1.61261 | |
43DAP/reference | 1.51119 | 0.338 |
47DAP/reference | 1.21494 | 0.022 |
52DAP/reference | 1.45133 | 0.01 |
57DAP/reference | 2.07223 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14385 | 0.691 |
17DAP/reference | 1.84336 | 0.14 |
27DAP/reference | 1.40416 | 0.115 |
39DAP/reference | 1.31819 | 0.285 |
41DAP/reference | 1.54466 | 0.01 |
42DAP/reference | 1.26446 | 0.065 |
43DAP/reference | 1.37004 | 0.066 |
47DAP/reference | 0.38675 | |
52DAP/reference | 1.53648 | 0.081 |
57DAP/reference | 0.878 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8273 | 0.787 |
26DAP/20DAP | 0.82199 | |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 0.74419 | 0.311 |
52DAP/51DAP | 1.239 | 0.068 |
53DAP/52DAP | 1.76357 | 0.171 |
55DAP/53DAP | 1.58872 | 0.991 |
57DAP/55DAP | 1.12212 | |
62DAP/57DAP | 1.31154 | 0.047 |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 1.1165 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.52484 | 0.277 |
IL2-6/WTpooled | 1.12771 | 1 |
IL7-5/WTpooled | 1.64931 | 1 |
IL7-3/WTpooled | 1.11605 | 1 |
IL12-4/WTpooled | 0.82722 | 0.581 |
IL1-4/WTpooled | 1.35523 | 1 |
WT/WTpooled | 0.83345 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.82819 | 0.333 |
Manapal/WT (red) | N/A | N/A |
|
|