Expression of 1-1-1.3.3.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47263 | 0.224 |
27DAP/17DAP | 0.81583 | 0.451 |
39DAP/27DAP | 1.3335 | 0.44 |
41DAP/39DAP | 0.85986 | 0.457 |
42DAP/41DAP | 1.19876 | 0.813 |
43DAP/42DAP | 0.96444 | 0.898 |
47DAP/43DAP | 0.99094 | 0.815 |
52DAP/47DAP | 1.04083 | 0.984 |
57DAP/52DAP | 0.76324 | 0.613 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43068 | 0.062 |
17DAP/reference | 1.04049 | 0.74 |
27DAP/reference | 1.05248 | 0.539 |
39DAP/reference | 0.97565 | 0.734 |
41DAP/reference | 1.29506 | 0.187 |
42DAP/reference | 1.17922 | 0.467 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.45323 | 0.142 |
52DAP/reference | 0.68742 | 0.02 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.4136 | 0.058 |
27DAP/17DAP | 0.87797 | 0.195 |
39DAP/27DAP | 0.92414 | 0.579 |
41DAP/39DAP | 1.00264 | 1 |
42DAP/41DAP | 0.98168 | 0.795 |
43DAP/42DAP | 1.01272 | 0.746 |
47DAP/43DAP | 0.9552 | 0.597 |
52DAP/47DAP | 0.97631 | 0.907 |
57DAP/52DAP | 0.86279 | 0.154 |
57DAP/7DAP | 0.943 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11694 | 0.393 |
17DAP/reference | 1.0507 | 0.627 |
27DAP/reference | 1.06015 | 0.453 |
39DAP/reference | 1.24069 | 0.077 |
41DAP/reference | 1.33043 | 0.01 |
42DAP/reference | 1.13461 | 0.308 |
43DAP/reference | 1.09217 | 0.325 |
47DAP/reference | 1.01831 | 1 |
52DAP/reference | 1.01273 | 0.886 |
57DAP/reference | 0.98562 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33409 | 0.05 |
17DAP/reference | 1.7602 | 0.007 |
27DAP/reference | 1.37473 | 0.092 |
39DAP/reference | 1.46806 | 0.027 |
41DAP/reference | 1.52183 | 0.01 |
42DAP/reference | 1.33793 | 0.015 |
43DAP/reference | 1.07947 | 1 |
47DAP/reference | 1.6789 | 0.008 |
52DAP/reference | 1.12551 | 0.156 |
57DAP/reference | 1.39548 | 0.123 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0123 | 0.804 |
17DAP/reference | 1.21757 | 0.337 |
27DAP/reference | 1.02606 | 0.967 |
39DAP/reference | 1.16036 | 0.483 |
41DAP/reference | 1.06685 | 0.605 |
42DAP/reference | 1.17738 | 0.184 |
43DAP/reference | 1.22314 | 0.145 |
47DAP/reference | 1.11969 | 0.339 |
52DAP/reference | 0.95982 | 0.637 |
57DAP/reference | 0.75482 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90158 | 1 |
26DAP/20DAP | 0.94535 | 1 |
34DAP/26DAP | 0.93688 | 0.848 |
51DAP/34DAP | 1.18735 | 0.73 |
52DAP/51DAP | 1.03639 | 0.888 |
53DAP/52DAP | 0.86455 | 0.677 |
55DAP/53DAP | 1.41812 | 0.382 |
57DAP/55DAP | 1.16204 | 0.915 |
62DAP/57DAP | 0.79365 | 0.681 |
68DAP/62DAP | 0.76384 | 0.579 |
68DAP/14DAP | 0.60428 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.25727 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.29961 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.46696 | 0.166 |
Immature Eggplant/Mature Eggplant | 1.07356 | 0.554 |
Ripe Pepper/Ripe Tomato | 0.64966 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.81999 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.04564 | |
12-2/M82 | 0.54459 | |
12-4/M82 | 1.0102 | 1 |
1-3/M82 | 1.8147 | |
2-1-1/M82 | 0.85949 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.43959 | |
4-1-1/M82 | 1.02202 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.57992 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.17686 | 0.496 |
6-2/M82 | 1.25355 | 1 |
6-3/M82 | 1.08051 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.27982 | 0.385 |
9-3-2/M82 | 1.10958 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.50339 | 0.365 |
IL2-6/WTpooled | 0.88839 | 1 |
IL7-5/WTpooled | 1.34381 | 0.792 |
IL7-3/WTpooled | 1.07813 | 1 |
IL12-4/WTpooled | 1.08201 | 0.891 |
IL1-4/WTpooled | 1.13872 | 1 |
WT/WTpooled | 0.98213 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18115 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95675 | 1 |
DC3000/delta hrp 6h | 1.07639 | 1 |
DC3000/delta hrp 12h | 1.28556 | 1 |
DC3000/delta hrp 24h | 1.31384 | 0.212 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25101 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.09917 | 0.535 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03887 | 1 |
Exp 36h | 0.87946 | 0.749 |
Exp 60h | 0.80762 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.14723 | 1 |
Var 0h | 1.20115 | 0.374 |
Var 12h I row2-row1 | 1.05784 | 0.736 |
Var 12h NI row2-row1 | 0.95026 | 0.713 |
Var 36h I row2-row1 | 1.65378 | 0.601 |
Var 36h NI row2-row1 | 1.00712 | 0.852 |
Var 60h I row2-row1 | 1.02246 | 1 |
Var 60h NI row2-row1 | 0.80796 | 0.292 |
Time course 0hI-0hNI | 0.97214 | 0.849 |
Time course 12hI-12hNI | 1.28774 | 0.125 |
Time course 36hI-36hNI | 1.3082 | 0.19 |
Time course 60hI-60hNI | 2.38637 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86845 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 0.8081 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.94702 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9773 | 0.609 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.30075 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76776 | 0.172 |
Manapal/WT (break) | 0.90454 | 1 |
Manapal/WT (red) | 1.28288 | 0.222 |
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