Expression of 1-1-1.3.3.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.472630.224
27DAP/17DAP0.815830.451
39DAP/27DAP1.33350.44
41DAP/39DAP0.859860.457
42DAP/41DAP1.198760.813
43DAP/42DAP0.964440.898
47DAP/43DAP0.990940.815
52DAP/47DAP1.040830.984
57DAP/52DAP0.763240.613

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.430680.062
17DAP/reference1.040490.74
27DAP/reference1.052480.539
39DAP/reference0.975650.734
41DAP/reference1.295060.187
42DAP/reference1.179220.467
43DAP/referenceN/AN/A
47DAP/reference1.453230.142
52DAP/reference0.687420.02
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.41360.058
27DAP/17DAP0.877970.195
39DAP/27DAP0.924140.579
41DAP/39DAP1.002641
42DAP/41DAP0.981680.795
43DAP/42DAP1.012720.746
47DAP/43DAP0.95520.597
52DAP/47DAP0.976310.907
57DAP/52DAP0.862790.154
57DAP/7DAP0.9431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116940.393
17DAP/reference1.05070.627
27DAP/reference1.060150.453
39DAP/reference1.240690.077
41DAP/reference1.330430.01
42DAP/reference1.134610.308
43DAP/reference1.092170.325
47DAP/reference1.018311
52DAP/reference1.012730.886
57DAP/reference0.985620.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.334090.05
17DAP/reference1.76020.007
27DAP/reference1.374730.092
39DAP/reference1.468060.027
41DAP/reference1.521830.01
42DAP/reference1.337930.015
43DAP/reference1.079471
47DAP/reference1.67890.008
52DAP/reference1.125510.156
57DAP/reference1.395480.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01230.804
17DAP/reference1.217570.337
27DAP/reference1.026060.967
39DAP/reference1.160360.483
41DAP/reference1.066850.605
42DAP/reference1.177380.184
43DAP/reference1.223140.145
47DAP/reference1.119690.339
52DAP/reference0.959820.637
57DAP/reference0.754820.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.901581
26DAP/20DAP0.945351
34DAP/26DAP0.936880.848
51DAP/34DAP1.187350.73
52DAP/51DAP1.036390.888
53DAP/52DAP0.864550.677
55DAP/53DAP1.418120.382
57DAP/55DAP1.162040.915
62DAP/57DAP0.793650.681
68DAP/62DAP0.763840.579
68DAP/14DAP0.604280.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.257270.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.299610.089
Mature Green Tomato/Ripe Tomato1.466960.166
Immature Eggplant/Mature Eggplant1.073560.554
Ripe Pepper/Ripe Tomato0.649660.224
Mature Eggplant/Ripe Tomato0.819991

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.04564
12-2/M820.54459
12-4/M821.01021
1-3/M821.8147
2-1-1/M820.85949
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.43959
4-1-1/M821.02202
4-1/M82N/AN/A
4-3-2/M821.57992
4-3/M82N/AN/A
5-3/M821.176860.496
6-2/M821.253551
6-3/M821.080511
7-1/M82N/AN/A
7-2/M821.279820.385
9-3-2/M821.10958

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.503390.365
IL2-6/WTpooled0.888391
IL7-5/WTpooled1.343810.792
IL7-3/WTpooled1.078131
IL12-4/WTpooled1.082010.891
IL1-4/WTpooled1.138721
WT/WTpooled0.982131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.181150.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.956751
DC3000/delta hrp 6h1.076391
DC3000/delta hrp 12h1.285561
DC3000/delta hrp 24h1.313840.212

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.251010.042
DC3000 delta B/DC3000 delta AB1.099170.535

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.038871
Exp 36h0.879460.749
Exp 60h0.807620.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.147231
Var 0h1.201150.374
Var 12h I row2-row11.057840.736
Var 12h NI row2-row10.950260.713
Var 36h I row2-row11.653780.601
Var 36h NI row2-row11.007120.852
Var 60h I row2-row11.022461
Var 60h NI row2-row10.807960.292
Time course 0hI-0hNI0.972140.849
Time course 12hI-12hNI1.287740.125
Time course 36hI-36hNI1.30820.19
Time course 60hI-60hNI2.386370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.868450.33
transgenic ySAMdc/azygous control (breaker)0.80810.173
transgenic ySAMdc/azygous control (red)0.947021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97730.609

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.300750.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.767760.172
Manapal/WT (break)0.904541
Manapal/WT (red)1.282880.222