Expression of 1-1-1.3.3.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72612 | 0.159 |
27DAP/17DAP | 0.86207 | 0.724 |
39DAP/27DAP | 0.94866 | 0.652 |
41DAP/39DAP | 0.88087 | 0.558 |
42DAP/41DAP | 1.13585 | 0.92 |
43DAP/42DAP | 1.0222 | 0.937 |
47DAP/43DAP | 0.64455 | 0.107 |
52DAP/47DAP | 1.93677 | 0.436 |
57DAP/52DAP | 0.79957 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91686 | 0.145 |
17DAP/reference | 0.8687 | 0.05 |
27DAP/reference | 0.98117 | 0.694 |
39DAP/reference | 0.63909 | 0.007 |
41DAP/reference | 0.76435 | 0.008 |
42DAP/reference | 0.92442 | 0.05 |
43DAP/reference | 1.05507 | |
47DAP/reference | 0.77185 | 0.002 |
52DAP/reference | 0.97294 | 0.53 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7073 | 0.048 |
27DAP/17DAP | 0.77602 | 0.475 |
39DAP/27DAP | 0.92789 | 0.482 |
41DAP/39DAP | 1.17904 | 0.07 |
42DAP/41DAP | 0.90032 | 0.495 |
43DAP/42DAP | 1.37239 | 0.122 |
47DAP/43DAP | 1.29006 | 0.61 |
52DAP/47DAP | 1.50327 | 0.194 |
57DAP/52DAP | 2.25255 | 0.029 |
57DAP/7DAP | 1.69808 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23737 | 0.085 |
17DAP/reference | 1.2974 | 0.038 |
27DAP/reference | 1.06697 | 0.804 |
39DAP/reference | 0.97995 | 0.552 |
41DAP/reference | 1.14267 | 0.314 |
42DAP/reference | 1.18 | 0.046 |
43DAP/reference | 1.27158 | 0.099 |
47DAP/reference | 1.01496 | 1 |
52DAP/reference | 1.21763 | 0.086 |
57DAP/reference | 1.34965 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87004 | 0.124 |
17DAP/reference | 0.8227 | 0.159 |
27DAP/reference | 0.99592 | 0.663 |
39DAP/reference | 1.11956 | 0.346 |
41DAP/reference | 1.09439 | 0.327 |
42DAP/reference | 0.85953 | 0.03 |
43DAP/reference | 0.79372 | 0.162 |
47DAP/reference | 0.84792 | 0.016 |
52DAP/reference | 1.21899 | 1 |
57DAP/reference | 0.93865 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29029 | 0.06 |
17DAP/reference | 1.17572 | 0.792 |
27DAP/reference | 1.32307 | 0.036 |
39DAP/reference | 1.398 | 0.033 |
41DAP/reference | 1.0661 | 1 |
42DAP/reference | 1.09661 | 0.589 |
43DAP/reference | 1.40039 | 0.037 |
47DAP/reference | 1.01505 | 1 |
52DAP/reference | 1.2313 | 0.252 |
57DAP/reference | 1.42139 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.33071 | 0.966 |
26DAP/20DAP | 0.81214 | 1 |
34DAP/26DAP | 1.07519 | 1 |
51DAP/34DAP | 0.76312 | 0.143 |
52DAP/51DAP | 0.89091 | 1 |
53DAP/52DAP | 1.15238 | 0.845 |
55DAP/53DAP | 1.05775 | 0.964 |
57DAP/55DAP | 0.80914 | 0.337 |
62DAP/57DAP | 1.19407 | 0.393 |
68DAP/62DAP | 1.11264 | 0.899 |
68DAP/14DAP | 1.9183 | 0.018 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92609 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.98642 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.3992 | 0.03 |
Immature Eggplant/Mature Eggplant | 0.42946 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.24844 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.4047 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11741 | 0.877 |
1-1-2/M82 | 1.0621 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.83476 | |
1-3/M82 | 1.77136 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96164 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.91264 | 0.578 |
5-3/M82 | 0.94918 | 1 |
6-2/M82 | 1.69717 | 1 |
6-3/M82 | 1.01628 | 1 |
7-1/M82 | 1.31991 | |
7-2/M82 | 1.1594 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.15416 | 0.277 |
IL2-6/WTpooled | 0.56103 | 0.348 |
IL7-5/WTpooled | 0.80023 | 1 |
IL7-3/WTpooled | 0.88971 | 0.298 |
IL12-4/WTpooled | 1.1127 | 0.891 |
IL1-4/WTpooled | 0.76547 | 0.402 |
WT/WTpooled | 1.01121 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17881 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96271 | 1 |
DC3000/delta hrp 6h | 1.163 | 1 |
DC3000/delta hrp 12h | 0.97438 | 1 |
DC3000/delta hrp 24h | 0.54846 | 0.037 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.44711 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.52893 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71265 | 1 |
Exp 36h | 0.72514 | 0.661 |
Exp 60h | 0.76301 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04643 | 1 |
Var 0h | 1.10839 | 0.98 |
Var 12h I row2-row1 | 0.86835 | 0.627 |
Var 12h NI row2-row1 | 0.90868 | 0.627 |
Var 36h I row2-row1 | 0.78305 | 0.805 |
Var 36h NI row2-row1 | 0.81494 | 1 |
Var 60h I row2-row1 | 1.09922 | 0.562 |
Var 60h NI row2-row1 | 1.13241 | 0.904 |
Time course 0hI-0hNI | 1.05693 | 0.833 |
Time course 12hI-12hNI | 0.86036 | 0.284 |
Time course 36hI-36hNI | 0.68376 | 0.023 |
Time course 60hI-60hNI | 0.13544 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.23089 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.53897 | 0.125 |
transgenic ySAMdc/azygous control (red) | 1.11743 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92672 | 0.053 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.71961 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.45435 | 0.105 |
Manapal/WT (break) | 1.09664 | 1 |
Manapal/WT (red) | 1.58756 | 0.164 |
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