Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.3.4.18

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.14341	0.656
27DAP/17DAP	1.03165	1
39DAP/27DAP	0.83443	0.414
41DAP/39DAP	1.10279	0.938
42DAP/41DAP	0.93362	1
43DAP/42DAP	1.19085	0.676
47DAP/43DAP	0.99993	0.949
52DAP/47DAP	0.9701	0.842
57DAP/52DAP	1.36491	0.963

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05167	0.735
17DAP/reference	0.96339	0.701
27DAP/reference	1.00087	1
39DAP/reference	0.85937	0.412
41DAP/reference	0.9562	0.154
42DAP/reference	0.85533	0.115
43DAP/reference	0.92795
47DAP/reference	0.89016	0.258
52DAP/reference	0.96709	0.546
57DAP/reference	1.05319	0.845

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.31854	0.482
27DAP/17DAP	1.34235	0.632
39DAP/27DAP	1.36186	0.308
41DAP/39DAP	1.0794	0.868
42DAP/41DAP	1.00466	0.816
43DAP/42DAP	0.85543	0.235
47DAP/43DAP	1.46897	0.508
52DAP/47DAP	0.94515	0.839
57DAP/52DAP	2.40258	0.181
57DAP/7DAP	1.81655	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.17899	0.185
17DAP/reference	1.0827	0.199
27DAP/reference	1.12849	0.16
39DAP/reference	1.0223	0.909
41DAP/reference	1.18431	0.075
42DAP/reference	1.18713	0.233
43DAP/reference	1.15389	0.124
47DAP/reference	1.01418	1
52DAP/reference	1.14236	0.159
57DAP/reference	1.3111	0.027

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.18435	0.634
17DAP/reference	0.86973	0.056
27DAP/reference	0.76059	0.269
39DAP/reference	0.83752	0.265
41DAP/reference	1.06761	0.536
42DAP/reference	0.99735	0.723
43DAP/reference	0.97826	0.657
47DAP/reference	0.93061	0.149
52DAP/reference	1.04418	0.498
57DAP/reference	0.90923	0.384

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.25411	0.119
17DAP/reference	1.00271	0.751
27DAP/reference	0.99835	0.805
39DAP/reference	1.12517	0.042
41DAP/reference	1.16748	0.077
42DAP/reference	1.34995	0.028
43DAP/reference	1.41833	0.035
47DAP/reference	1.10891	0.82
52DAP/reference	1.42416	0.119
57DAP/reference	1.33466	0.067

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.82215	0.966
26DAP/20DAP	1.09776	0.818
34DAP/26DAP	0.70819	0.675
51DAP/34DAP	0.88797	0.649
52DAP/51DAP	0.71134	0.07
53DAP/52DAP	1.16981	0.738
55DAP/53DAP	0.98437	0.784
57DAP/55DAP	0.76117	0.225
62DAP/57DAP	0.544	0.162
68DAP/62DAP	1.16617	0.869
68DAP/14DAP	1.26727	0.469

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.83291	0.224

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.39198	0.082
Mature Green Tomato/Ripe Tomato	0.77461	0.487
Immature Eggplant/Mature Eggplant	1.2903	0.066
Ripe Pepper/Ripe Tomato	1.6627	0.258
Mature Eggplant/Ripe Tomato	1.49404	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	0.69651
12-2/M82	N/A	N/A
12-4/M82	0.62122	0.257
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.9567	1
6-2/M82	0.55244	0.497
6-3/M82	0.7809
7-1/M82	0.92681
7-2/M82	0.72899
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.07545
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.574
IL12-4/WTpooled	1.62445	0.525
IL1-4/WTpooled	1.56196
WT/WTpooled	0.90147	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.31976	0.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.0407	0.921
DC3000/delta hrp 6h	1.16288	1
DC3000/delta hrp 12h	0.72668	1
DC3000/delta hrp 24h	1.1913	0.283

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	1.20098	0.326
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	0.72806
Var 12h NI row2-row1	1.08498
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.21367	0.272
transgenic ySAMdc/azygous control (breaker)	0.69762	0.15
transgenic ySAMdc/azygous control (red)	0.72703	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.07874	0.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.46559	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.98038	1
Manapal/WT (break)	0.75714	0.333
Manapal/WT (red)	0.85682	0.183