Expression of 1-1-1.3.4.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89952 | 0.568 |
27DAP/17DAP | 1.23143 | 0.849 |
39DAP/27DAP | 0.96525 | 0.682 |
41DAP/39DAP | 0.79774 | 0.343 |
42DAP/41DAP | 1.03263 | 0.978 |
43DAP/42DAP | 1.08013 | 0.993 |
47DAP/43DAP | 0.71943 | 0.221 |
52DAP/47DAP | 0.98792 | 0.924 |
57DAP/52DAP | 1.09147 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13136 | 0.126 |
17DAP/reference | 1.06175 | 0.239 |
27DAP/reference | 0.98197 | 0.725 |
39DAP/reference | 0.9348 | 0.221 |
41DAP/reference | 0.93437 | 0.542 |
42DAP/reference | 0.9575 | 0.278 |
43DAP/reference | 0.81602 | |
47DAP/reference | 0.97115 | 0.366 |
52DAP/reference | 0.8025 | 0.172 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.63358 | 0.105 |
27DAP/17DAP | 1.09583 | 0.915 |
39DAP/27DAP | 0.98423 | 0.775 |
41DAP/39DAP | 1.93174 | 0.012 |
42DAP/41DAP | 0.7255 | 0.039 |
43DAP/42DAP | 0.8762 | 0.224 |
47DAP/43DAP | 1.65231 | 0.414 |
52DAP/47DAP | 0.86457 | 0.777 |
57DAP/52DAP | 1.09231 | 0.957 |
57DAP/7DAP | 0.87517 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40607 | 0.141 |
17DAP/reference | 1.22084 | 0.18 |
27DAP/reference | 1.04467 | 0.974 |
39DAP/reference | 1.13768 | 0.252 |
41DAP/reference | 1.27444 | 0.043 |
42DAP/reference | 1.26134 | 0.076 |
43DAP/reference | 0.94489 | 0.334 |
47DAP/reference | 0.97265 | 0.504 |
52DAP/reference | 0.94725 | 0.332 |
57DAP/reference | 1.08883 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10874 | 0.66 |
17DAP/reference | 1.04938 | 0.658 |
27DAP/reference | 0.99938 | 0.79 |
39DAP/reference | 1.082 | 0.502 |
41DAP/reference | 0.94998 | 0.348 |
42DAP/reference | 0.89846 | 0.039 |
43DAP/reference | 0.98233 | 0.681 |
47DAP/reference | 0.88482 | 0.087 |
52DAP/reference | 0.99996 | 0.761 |
57DAP/reference | 0.94152 | 0.169 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52215 | 0.027 |
17DAP/reference | 1.19376 | 0.518 |
27DAP/reference | 1.15703 | 0.179 |
39DAP/reference | 1.13806 | 0.034 |
41DAP/reference | 1.14182 | 0.425 |
42DAP/reference | 0.99587 | 0.816 |
43DAP/reference | 1.02677 | 0.755 |
47DAP/reference | 0.97079 | 0.465 |
52DAP/reference | 1.26065 | 0.106 |
57DAP/reference | 1.01398 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94882 | 1 |
26DAP/20DAP | 0.94859 | 1 |
34DAP/26DAP | 1.32214 | 0.819 |
51DAP/34DAP | 0.73725 | 0.466 |
52DAP/51DAP | 1.5232 | 0.503 |
53DAP/52DAP | 0.83837 | 0.202 |
55DAP/53DAP | 0.93708 | 0.709 |
57DAP/55DAP | 1.24737 | 0.818 |
62DAP/57DAP | 0.90183 | 0.466 |
68DAP/62DAP | 0.86696 | 0.7 |
68DAP/14DAP | 1.1103 | 0.211 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.72075 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98647 | 0.886 |
Mature Green Tomato/Ripe Tomato | 0.72429 | 0.522 |
Immature Eggplant/Mature Eggplant | 0.62386 | |
Ripe Pepper/Ripe Tomato | 0.80041 | 1 |
Mature Eggplant/Ripe Tomato | 0.4758 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05355 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.18528 | 1 |
6-2/M82 | 2.43117 | 0.253 |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.4895 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.50311 | 0.277 |
IL2-6/WTpooled | 1.17706 | 0.659 |
IL7-5/WTpooled | 1.60377 | 1 |
IL7-3/WTpooled | 0.87424 | 1 |
IL12-4/WTpooled | 1.19282 | 0.624 |
IL1-4/WTpooled | 1.3515 | 1 |
WT/WTpooled | 0.98437 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.39603 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95393 | 1 |
DC3000/delta hrp 6h | 1.29293 | 0.978 |
DC3000/delta hrp 12h | 1.0018 | 1 |
DC3000/delta hrp 24h | 1.23207 | 0.051 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.24784 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90819 | 1 |
Exp 36h | 1.00686 | 1 |
Exp 60h | 1.04633 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02034 | |
Var 0h | 1.72348 | 0.259 |
Var 12h I row2-row1 | 0.75189 | |
Var 12h NI row2-row1 | 1.01685 | 1 |
Var 36h I row2-row1 | 1.0284 | 1 |
Var 36h NI row2-row1 | 1.05163 | 1 |
Var 60h I row2-row1 | 0.77599 | |
Var 60h NI row2-row1 | 1.1092 | 0.904 |
Time course 0hI-0hNI | 1.04764 | 0.833 |
Time course 12hI-12hNI | 1.06499 | 0.58 |
Time course 36hI-36hNI | 1.39798 | 0.005 |
Time course 60hI-60hNI | 1.74497 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12391 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.74682 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.99718 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97331 | 0.231 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08497 | 0.307 |
Manapal/WT (break) | 1.00304 | 1 |
Manapal/WT (red) | 0.66189 | 0.199 |
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