Expression of 1-1-1.3.5.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80871 | 0.464 |
27DAP/17DAP | 1.05318 | 0.881 |
39DAP/27DAP | 1.22082 | 0.603 |
41DAP/39DAP | 1.217 | 0.473 |
42DAP/41DAP | 1.29817 | 0.361 |
43DAP/42DAP | 1.36112 | 0.724 |
47DAP/43DAP | 0.8765 | 0.562 |
52DAP/47DAP | 1.36344 | 0.608 |
57DAP/52DAP | 0.96949 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9769 | 0.562 |
17DAP/reference | 1.13521 | 0.631 |
27DAP/reference | 0.86655 | 0.176 |
39DAP/reference | 0.92284 | 0.306 |
41DAP/reference | 0.88184 | 0.154 |
42DAP/reference | 0.87139 | 0.075 |
43DAP/reference | 0.99496 | 0.861 |
47DAP/reference | 0.85277 | 0.008 |
52DAP/reference | 1.04172 | 0.695 |
57DAP/reference | 0.90282 | 0.199 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79987 | 0.27 |
27DAP/17DAP | 1.36877 | 0.328 |
39DAP/27DAP | 0.99361 | 0.908 |
41DAP/39DAP | 1.04776 | 0.827 |
42DAP/41DAP | 1.29434 | 0.783 |
43DAP/42DAP | 1.3345 | 0.061 |
47DAP/43DAP | 1.19927 | 0.281 |
52DAP/47DAP | 1.03635 | 0.915 |
57DAP/52DAP | 1.55393 | 0.068 |
57DAP/7DAP | 1.07388 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89915 | 0.183 |
17DAP/reference | 0.88938 | 0.124 |
27DAP/reference | 0.8059 | 0.012 |
39DAP/reference | 0.87088 | 0.109 |
41DAP/reference | 0.88664 | 0.076 |
42DAP/reference | 0.80364 | 0.011 |
43DAP/reference | 0.89542 | 0.132 |
47DAP/reference | 0.92279 | 0.383 |
52DAP/reference | 0.70639 | 0.012 |
57DAP/reference | 0.76972 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87592 | 0.257 |
17DAP/reference | 0.99433 | 0.673 |
27DAP/reference | 0.96948 | 0.519 |
39DAP/reference | 0.92062 | 0.257 |
41DAP/reference | 0.92189 | 0.16 |
42DAP/reference | 0.87712 | 0.15 |
43DAP/reference | 0.9131 | 0.328 |
47DAP/reference | 0.81206 | 0.014 |
52DAP/reference | 1.02027 | 0.938 |
57DAP/reference | 1.27506 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90276 | 0.197 |
17DAP/reference | 0.91552 | 0.165 |
27DAP/reference | 1.00433 | 0.843 |
39DAP/reference | 0.82295 | 0.026 |
41DAP/reference | 1.0362 | 1 |
42DAP/reference | 0.84374 | 0.134 |
43DAP/reference | 0.90818 | 0.188 |
47DAP/reference | 0.92822 | 0.335 |
52DAP/reference | 0.82897 | 0.167 |
57DAP/reference | 0.91994 | 0.321 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31837 | 0.966 |
26DAP/20DAP | 0.89042 | 1 |
34DAP/26DAP | 1.36824 | |
51DAP/34DAP | 1.30074 | 0.082 |
52DAP/51DAP | 0.91366 | 1 |
53DAP/52DAP | 1.3589 | 0.58 |
55DAP/53DAP | 1.16263 | 0.693 |
57DAP/55DAP | 0.84879 | 0.327 |
62DAP/57DAP | 1.08156 | 1 |
68DAP/62DAP | 0.79123 | 0.787 |
68DAP/14DAP | 1.20376 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.36002 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.11575 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.15472 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.54374 | 0.277 |
IL2-6/WTpooled | 1.39467 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92577 | 1 |
IL12-4/WTpooled | 1.3418 | 0.839 |
IL1-4/WTpooled | 1.23459 | 0.421 |
WT/WTpooled | 1.05969 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01527 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08948 | 0.774 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.81622 | |
DC3000/delta hrp 24h | 0.70038 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08913 | |
DC3000 delta B/DC3000 delta AB | 1.30863 | 0.341 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02543 | |
Var 0h | 1.056 | 1 |
Var 12h I row2-row1 | 0.87093 | 0.39 |
Var 12h NI row2-row1 | 1.06849 | 1 |
Var 36h I row2-row1 | 1.63122 | 0.489 |
Var 36h NI row2-row1 | 0.72576 | 0.645 |
Var 60h I row2-row1 | 0.83699 | 0.306 |
Var 60h NI row2-row1 | 0.75862 | 0.932 |
Time course 0hI-0hNI | 0.89215 | 0.519 |
Time course 12hI-12hNI | 0.96704 | 0.562 |
Time course 36hI-36hNI | 1.07168 | 0.355 |
Time course 60hI-60hNI | 1.7731 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.76954 | 1 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92616 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.43046 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.38432 | 0.381 |
Manapal/WT (red) | 1.5534 | 0.222 |
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