Expression of 1-1-1.3.5.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.808710.464
27DAP/17DAP1.053180.881
39DAP/27DAP1.220820.603
41DAP/39DAP1.2170.473
42DAP/41DAP1.298170.361
43DAP/42DAP1.361120.724
47DAP/43DAP0.87650.562
52DAP/47DAP1.363440.608
57DAP/52DAP0.969490.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.97690.562
17DAP/reference1.135210.631
27DAP/reference0.866550.176
39DAP/reference0.922840.306
41DAP/reference0.881840.154
42DAP/reference0.871390.075
43DAP/reference0.994960.861
47DAP/reference0.852770.008
52DAP/reference1.041720.695
57DAP/reference0.902820.199

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.799870.27
27DAP/17DAP1.368770.328
39DAP/27DAP0.993610.908
41DAP/39DAP1.047760.827
42DAP/41DAP1.294340.783
43DAP/42DAP1.33450.061
47DAP/43DAP1.199270.281
52DAP/47DAP1.036350.915
57DAP/52DAP1.553930.068
57DAP/7DAP1.073881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899150.183
17DAP/reference0.889380.124
27DAP/reference0.80590.012
39DAP/reference0.870880.109
41DAP/reference0.886640.076
42DAP/reference0.803640.011
43DAP/reference0.895420.132
47DAP/reference0.922790.383
52DAP/reference0.706390.012
57DAP/reference0.769720.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.875920.257
17DAP/reference0.994330.673
27DAP/reference0.969480.519
39DAP/reference0.920620.257
41DAP/reference0.921890.16
42DAP/reference0.877120.15
43DAP/reference0.91310.328
47DAP/reference0.812060.014
52DAP/reference1.020270.938
57DAP/reference1.275060.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902760.197
17DAP/reference0.915520.165
27DAP/reference1.004330.843
39DAP/reference0.822950.026
41DAP/reference1.03621
42DAP/reference0.843740.134
43DAP/reference0.908180.188
47DAP/reference0.928220.335
52DAP/reference0.828970.167
57DAP/reference0.919940.321

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.318370.966
26DAP/20DAP0.890421
34DAP/26DAP1.36824
51DAP/34DAP1.300740.082
52DAP/51DAP0.913661
53DAP/52DAP1.35890.58
55DAP/53DAP1.162630.693
57DAP/55DAP0.848790.327
62DAP/57DAP1.081561
68DAP/62DAP0.791230.787
68DAP/14DAP1.203760.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.360020.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.115750.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.15472
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.543740.277
IL2-6/WTpooled1.394670.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.925771
IL12-4/WTpooled1.34180.839
IL1-4/WTpooled1.234590.421
WT/WTpooled1.059691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.015271

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089480.774
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.81622
DC3000/delta hrp 24h0.700380.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08913
DC3000 delta B/DC3000 delta AB1.308630.341

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02543
Var 0h1.0561
Var 12h I row2-row10.870930.39
Var 12h NI row2-row11.068491
Var 36h I row2-row11.631220.489
Var 36h NI row2-row10.725760.645
Var 60h I row2-row10.836990.306
Var 60h NI row2-row10.758620.932
Time course 0hI-0hNI0.892150.519
Time course 12hI-12hNI0.967040.562
Time course 36hI-36hNI1.071680.355
Time course 60hI-60hNI1.77310.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.769541
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.926160.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.430460.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.384320.381
Manapal/WT (red)1.55340.222