Expression of 1-1-1.3.5.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.9215 | 0.77 |
27DAP/17DAP | 1.06275 | 0.91 |
39DAP/27DAP | 0.93455 | 0.67 |
41DAP/39DAP | 1.17123 | 0.833 |
42DAP/41DAP | 1.37759 | 0.691 |
43DAP/42DAP | 1.07355 | 1 |
47DAP/43DAP | 1.06678 | 0.756 |
52DAP/47DAP | 0.84814 | 0.598 |
57DAP/52DAP | 1.10433 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45492 | 0.017 |
17DAP/reference | 0.51264 | 0.007 |
27DAP/reference | 0.76422 | 0.137 |
39DAP/reference | 0.58696 | 0.018 |
41DAP/reference | 0.64442 | 0.039 |
42DAP/reference | 0.79316 | 0.009 |
43DAP/reference | 0.96956 | 0.691 |
47DAP/reference | 0.60166 | 0.001 |
52DAP/reference | 0.50277 | 0.013 |
57DAP/reference | 0.90305 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.33596 | |
27DAP/17DAP | 1.19349 | |
39DAP/27DAP | 0.98702 | 1 |
41DAP/39DAP | 1.43938 | |
42DAP/41DAP | 0.8703 | 0.746 |
43DAP/42DAP | 2.19547 | 0.212 |
47DAP/43DAP | 1.71347 | 0.88 |
52DAP/47DAP | 1.0116 | 0.991 |
57DAP/52DAP | 1.73661 | |
57DAP/7DAP | 0.91321 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36661 | 0.036 |
17DAP/reference | 1.36543 | 0.009 |
27DAP/reference | 1.35532 | 0.073 |
39DAP/reference | 1.56187 | 0.007 |
41DAP/reference | 1.86762 | 0.009 |
42DAP/reference | 2.02625 | 0.007 |
43DAP/reference | 1.33408 | 0.02 |
47DAP/reference | 0.9415 | 0.504 |
52DAP/reference | 1.16485 | 0.055 |
57DAP/reference | 1.35076 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33356 | 0.284 |
17DAP/reference | 0.66229 | 0.021 |
27DAP/reference | 0.59117 | 0.018 |
39DAP/reference | 0.77843 | 0.041 |
41DAP/reference | 0.89534 | 0.152 |
42DAP/reference | 0.76562 | 0.016 |
43DAP/reference | 0.64102 | 0.003 |
47DAP/reference | 1.23409 | 0.24 |
52DAP/reference | 0.60953 | 0.005 |
57DAP/reference | 0.71539 | 0.015 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34309 | 0.162 |
17DAP/reference | 1.12068 | 0.966 |
27DAP/reference | 1.38174 | 0.131 |
39DAP/reference | 1.05648 | 1 |
41DAP/reference | 1.13699 | 0.383 |
42DAP/reference | 1.17602 | 0.51 |
43DAP/reference | 1.04021 | 1 |
47DAP/reference | 0.57271 | 0.004 |
52DAP/reference | 1.40209 | 0.542 |
57DAP/reference | 0.78382 | 0.09 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11508 | 0.966 |
26DAP/20DAP | 0.93728 | 1 |
34DAP/26DAP | 0.99316 | |
51DAP/34DAP | 0.58041 | |
52DAP/51DAP | 1.15288 | 0.146 |
53DAP/52DAP | 0.76088 | 0.089 |
55DAP/53DAP | 2.10126 | 0.755 |
57DAP/55DAP | 1.09214 | 1 |
62DAP/57DAP | 0.9731 | 0.994 |
68DAP/62DAP | 1.16243 | |
68DAP/14DAP | 1.3035 | 0.328 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.39249 | 0.478 |
Immature Eggplant/Mature Eggplant | 4.63927 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.16532 | |
Mature Eggplant/Ripe Tomato | 4.03376 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.65511 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.71515 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03278 | 1 |
IL2-6/WTpooled | 0.65877 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.86635 | 0.294 |
IL12-4/WTpooled | 0.72381 | 0.71 |
IL1-4/WTpooled | 1.5226 | 1 |
WT/WTpooled | 1.01574 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.01132 | 1 |
DC3000/delta hrp 12h | 0.71988 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08398 | 1 |
Exp 36h | 1.98821 | 1 |
Exp 60h | 1.24712 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.20317 | 0.374 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.24261 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 0.78494 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.00228 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93271 | 0.191 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02439 | 1 |
Manapal/WT (break) | 0.65079 | 1 |
Manapal/WT (red) | N/A | N/A |
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