Expression of 1-1-1.3.6.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.806180.148
27DAP/17DAP0.965690.945
39DAP/27DAP1.254980.27
41DAP/39DAP1.156830.56
42DAP/41DAP0.918161
43DAP/42DAP0.950590.888
47DAP/43DAP1.105040.702
52DAP/47DAP1.159120.754
57DAP/52DAP1.117520.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.075630.788
17DAP/reference0.888040.24
27DAP/reference1.021520.953
39DAP/reference1.009260.975
41DAP/reference1.096670.338
42DAP/reference1.272840.002
43DAP/reference0.925440.316
47DAP/reference1.138310.136
52DAP/reference1.109210.388
57DAP/reference1.024031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.829480.415
27DAP/17DAP0.866090.418
39DAP/27DAP1.054940.728
41DAP/39DAP1.235380.284
42DAP/41DAP0.929820.396
43DAP/42DAP1.086320.324
47DAP/43DAP1.083290.788
52DAP/47DAP0.968350.9
57DAP/52DAP1.401220.13
57DAP/7DAP1.00551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.957580.445
17DAP/reference1.084620.693
27DAP/reference0.89840.348
39DAP/reference0.967230.474
41DAP/reference1.124470.101
42DAP/reference1.186850.308
43DAP/reference1.100580.637
47DAP/reference0.980320.671
52DAP/reference1.387930.149
57DAP/reference0.994140.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892030.248
17DAP/reference1.17430.161
27DAP/reference1.059270.629
39DAP/reference0.988680.569
41DAP/reference1.009730.631
42DAP/reference1.034370.81
43DAP/reference0.89110.328
47DAP/reference1.007980.79
52DAP/reference1.235760.012
57DAP/reference1.019620.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121720.408
17DAP/reference0.8820.255
27DAP/reference0.90572
39DAP/reference1.261630.182
41DAP/reference1.437520.031
42DAP/reference1.145080.612
43DAP/reference1.183740.314
47DAP/reference1.031170.994
52DAP/reference1.12370.639
57DAP/reference1.007040.902

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.344430.966
26DAP/20DAP1.206870.598
34DAP/26DAP0.77415
51DAP/34DAP1.014630.909
52DAP/51DAP0.955261
53DAP/52DAP0.983620.891
55DAP/53DAP1.005080.964
57DAP/55DAP0.956250.825
62DAP/57DAP0.830440.681
68DAP/62DAP0.88326
68DAP/14DAP2.786730.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.378430.061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.54112
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.065591
Mature Eggplant/Ripe Tomato1.3395

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.109971
12-2/M82N/AN/A
12-4/M820.90331
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.892661
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.22731
5-3/M821.104411
6-2/M821.272670.235
6-3/M820.81128
7-1/M82N/AN/A
7-2/M821.32321
9-3-2/M821.34084

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.052180.493
IL2-6/WTpooled0.972061
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.824790.418
IL12-4/WTpooled0.935181
IL1-4/WTpooled0.99911
WT/WTpooled0.834681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.289550.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060160.914
DC3000/delta hrp 6h1.084741
DC3000/delta hrp 12h1.04184
DC3000/delta hrp 24h1.066530.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.626870.034
DC3000 delta B/DC3000 delta AB1.606890.082

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.010451
Exp 36h0.664980.449
Exp 60h0.686620.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.041961
Var 0h0.503311
Var 12h I row2-row11.077910.613
Var 12h NI row2-row11.187231
Var 36h I row2-row11.077741
Var 36h NI row2-row10.644020.645
Var 60h I row2-row10.77520.292
Var 60h NI row2-row10.92420.516
Time course 0hI-0hNI0.913030.253
Time course 12hI-12hNI1.106410.134
Time course 36hI-36hNI1.586010.011
Time course 60hI-60hNI1.880940.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.844810.289
transgenic ySAMdc/azygous control (breaker)1.051481
transgenic ySAMdc/azygous control (red)0.989071

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.00610.723

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.889240.172
Manapal/WT (break)1.054441
Manapal/WT (red)1.025831