Expression of 1-1-1.3.7.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02309 | 0.912 |
27DAP/17DAP | 1.09636 | 0.873 |
39DAP/27DAP | 1.26082 | 0.372 |
41DAP/39DAP | 0.9151 | 0.627 |
42DAP/41DAP | 1.0348 | 0.962 |
43DAP/42DAP | 0.89995 | 0.597 |
47DAP/43DAP | 0.89847 | 0.645 |
52DAP/47DAP | 1.60095 | 0.249 |
57DAP/52DAP | 1.12507 | 0.93 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98871 | 0.645 |
17DAP/reference | 0.92756 | 0.06 |
27DAP/reference | 0.94026 | 0.089 |
39DAP/reference | 0.91734 | 0.09 |
41DAP/reference | 0.92144 | 0.114 |
42DAP/reference | 1.10005 | 0.032 |
43DAP/reference | 0.97242 | 0.331 |
47DAP/reference | 1.04941 | 0.161 |
52DAP/reference | 1.12008 | 0.079 |
57DAP/reference | 0.99223 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9652 | 0.732 |
27DAP/17DAP | 1.10447 | 0.706 |
39DAP/27DAP | 1.01702 | 0.77 |
41DAP/39DAP | 0.99895 | 1 |
42DAP/41DAP | 1.04872 | 0.593 |
43DAP/42DAP | 0.97034 | 0.558 |
47DAP/43DAP | 0.96334 | 0.734 |
52DAP/47DAP | 0.95542 | 0.893 |
57DAP/52DAP | 0.88824 | 0.346 |
57DAP/7DAP | 1.07713 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01012 | 1 |
17DAP/reference | 1.05523 | 0.162 |
27DAP/reference | 1.09218 | 0.012 |
39DAP/reference | 0.97927 | 0.264 |
41DAP/reference | 1.03782 | 0.507 |
42DAP/reference | 1.11823 | 0.021 |
43DAP/reference | 1.07676 | 0.178 |
47DAP/reference | 0.98112 | 0.504 |
52DAP/reference | 1.00119 | 0.802 |
57DAP/reference | 1.1477 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04202 | 0.712 |
17DAP/reference | 1.20324 | 0.101 |
27DAP/reference | 1.09397 | 0.48 |
39DAP/reference | 1.10365 | 0.67 |
41DAP/reference | 1.15127 | 0.142 |
42DAP/reference | 1.08212 | 0.455 |
43DAP/reference | 1.14383 | 0.047 |
47DAP/reference | 1.01906 | 0.731 |
52DAP/reference | 1.03862 | 0.702 |
57DAP/reference | 0.95646 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00903 | 1 |
17DAP/reference | 1.1395 | 0.518 |
27DAP/reference | 1.03251 | 0.325 |
39DAP/reference | 1.11051 | 0.254 |
41DAP/reference | 1.11449 | 0.369 |
42DAP/reference | 1.14882 | 0.189 |
43DAP/reference | 1.09432 | 0.515 |
47DAP/reference | 1.01795 | 0.994 |
52DAP/reference | 1.07958 | 0.491 |
57DAP/reference | 1.18229 | 0.233 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95074 | 1 |
26DAP/20DAP | 0.87914 | 0.317 |
34DAP/26DAP | 0.89879 | 0.753 |
51DAP/34DAP | 0.99907 | 0.957 |
52DAP/51DAP | 1.07598 | 0.651 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.16655 | |
57DAP/55DAP | 0.98473 | 0.921 |
62DAP/57DAP | 0.98682 | 1 |
68DAP/62DAP | 0.97309 | 0.863 |
68DAP/14DAP | 0.97729 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11061 | 0.264 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.33069 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.31261 | 0.69 |
Immature Eggplant/Mature Eggplant | 0.98907 | 1 |
Ripe Pepper/Ripe Tomato | 0.25803 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.89065 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95721 | 0.944 |
1-1-2/M82 | 0.9688 | 1 |
12-2/M82 | 0.91882 | 0.955 |
12-4/M82 | 0.97952 | 1 |
1-3/M82 | 1.03758 | 1 |
2-1-1/M82 | 1.0516 | 1 |
2-1/M82 | 1.6309 | |
2-6/M82 | 0.97485 | 1 |
3-2/M82 | 1.01686 | 1 |
4-1-1/M82 | 0.88973 | 1 |
4-1/M82 | 0.84672 | |
4-3-2/M82 | 0.92991 | 1 |
4-3/M82 | 1.00456 | 1 |
5-3/M82 | 0.96224 | 1 |
6-2/M82 | 0.92673 | 1 |
6-3/M82 | 1.00405 | 1 |
7-1/M82 | 1.0211 | 1 |
7-2/M82 | 0.91902 | 0.881 |
9-3-2/M82 | 0.92298 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12508 | 0.365 |
IL2-6/WTpooled | 0.97943 | 1 |
IL7-5/WTpooled | 0.8588 | 1 |
IL7-3/WTpooled | 1.38429 | 1 |
IL12-4/WTpooled | 0.97143 | 1 |
IL1-4/WTpooled | 1.1357 | 1 |
WT/WTpooled | 1.09821 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87689 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97791 | 1 |
DC3000/delta hrp 6h | 0.91297 | 0.95 |
DC3000/delta hrp 12h | 0.96389 | 1 |
DC3000/delta hrp 24h | 1.10387 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98199 | 1 |
DC3000 delta B/DC3000 delta AB | 1.00406 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06046 | 1 |
Var 0h | 1.03056 | 0.936 |
Var 12h I row2-row1 | 1.10783 | 0.283 |
Var 12h NI row2-row1 | 0.97861 | 0.906 |
Var 36h I row2-row1 | 1.3848 | 1 |
Var 36h NI row2-row1 | 0.9886 | 0.852 |
Var 60h I row2-row1 | 0.99472 | 1 |
Var 60h NI row2-row1 | 1.131 | 0.904 |
Time course 0hI-0hNI | 1.0502 | 0.662 |
Time course 12hI-12hNI | 0.99772 | 1 |
Time course 36hI-36hNI | 0.99766 | 0.718 |
Time course 60hI-60hNI | 0.93308 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03115 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.71017 | 0.134 |
transgenic ySAMdc/azygous control (red) | 1.03344 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95192 | 0.072 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16482 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95883 | 1 |
Manapal/WT (break) | 0.92168 | 1 |
Manapal/WT (red) | 0.91736 | 0.188 |
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