Expression of 1-1-1.3.8.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.889630.551
27DAP/17DAP1.079981
39DAP/27DAP1.056921
41DAP/39DAP1.647170.125
42DAP/41DAP1.522740.095
43DAP/42DAP1.784310.032
47DAP/43DAP0.836820.499
52DAP/47DAP0.798520.498
57DAP/52DAP0.957940.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.855140.115
17DAP/reference0.911590.26
27DAP/reference1.036580.794
39DAP/reference1.01450.889
41DAP/reference1.004311
42DAP/reference0.907250.064
43DAP/reference0.974410.708
47DAP/reference1.001210.674
52DAP/reference0.977460.53
57DAP/reference1.043770.704

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.097710.438
27DAP/17DAP0.981480.919
39DAP/27DAP0.957630.754
41DAP/39DAP1.023911
42DAP/41DAP1.123460.824
43DAP/42DAP1.609750.015
47DAP/43DAP1.101810.749
52DAP/47DAP1.176980.494
57DAP/52DAP1.121490.627
57DAP/7DAP2.127770.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92820.296
17DAP/reference1.044040.822
27DAP/reference1.184690.301
39DAP/reference1.162720.297
41DAP/reference1.054550.791
42DAP/reference1.351160.046
43DAP/reference1.002080.694
47DAP/reference0.933350.504
52DAP/reference0.802940.061
57DAP/reference0.984890.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97920.77
17DAP/reference0.958930.499
27DAP/reference0.863290.134
39DAP/reference0.893760.159
41DAP/reference0.93480.118
42DAP/reference0.921850.15
43DAP/reference0.969350.539
47DAP/reference0.997910.749
52DAP/reference1.044990.838
57DAP/reference0.974780.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.958630.391
17DAP/reference0.983970.696
27DAP/reference1.051850.871
39DAP/reference0.92390.36
41DAP/reference0.910220.293
42DAP/reference1.094030.443
43DAP/reference0.791040.066
47DAP/reference0.967580.509
52DAP/reference1.075220.946
57DAP/reference0.876920.154

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.095440.966
26DAP/20DAP1.237720.223
34DAP/26DAP1.33031
51DAP/34DAP1.036830.949
52DAP/51DAP0.768761
53DAP/52DAP1.229310.678
55DAP/53DAP1.295790.252
57DAP/55DAP1.581510.947
62DAP/57DAP5.482440.723
68DAP/62DAP1.477350.472
68DAP/14DAP0.898641

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.489970.061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.81392
Mature Green Tomato/Ripe Tomato0.758010.256
Immature Eggplant/Mature Eggplant0.33997
Ripe Pepper/Ripe Tomato0.93381
Mature Eggplant/Ripe Tomato1.38830.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M822.069881
12-2/M82N/AN/A
12-4/M820.74612
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.69393
3-2/M822.20254
4-1-1/M82N/AN/A
4-1/M822.63684
4-3-2/M821.19954
4-3/M82N/AN/A
5-3/M820.942261
6-2/M82N/AN/A
6-3/M821.20622
7-1/M821.08371
7-2/M821.26626
9-3-2/M821.25392

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.33166
IL2-6/WTpooled0.75230.473
IL7-5/WTpooled0.22296
IL7-3/WTpooled1.195861
IL12-4/WTpooled0.854720.71
IL1-4/WTpooled1.021321
WT/WTpooled1.023070.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.760850.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.236520.921
DC3000/delta hrp 6h1.046221
DC3000/delta hrp 12h0.995571
DC3000/delta hrp 24h1.464650.308

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.617190.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.008941
Exp 36h1.895941
Exp 60h1.069781

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.099891
Var 0h0.959971
Var 12h I row2-row10.988971
Var 12h NI row2-row10.986110.906
Var 36h I row2-row11.146221
Var 36h NI row2-row10.818180.645
Var 60h I row2-row11.04241
Var 60h NI row2-row10.988521
Time course 0hI-0hNI0.959150.709
Time course 12hI-12hNI1.044840.65
Time course 36hI-36hNI0.901510.104
Time course 60hI-60hNI0.577990.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.215430.221
transgenic ySAMdc/azygous control (breaker)1.340810.248
transgenic ySAMdc/azygous control (red)0.914591

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.045710.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.860151
Manapal/WT (break)0.984041
Manapal/WT (red)0.695720.181