Expression of 1-1-1.3.8.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88963 | 0.551 |
27DAP/17DAP | 1.07998 | 1 |
39DAP/27DAP | 1.05692 | 1 |
41DAP/39DAP | 1.64717 | 0.125 |
42DAP/41DAP | 1.52274 | 0.095 |
43DAP/42DAP | 1.78431 | 0.032 |
47DAP/43DAP | 0.83682 | 0.499 |
52DAP/47DAP | 0.79852 | 0.498 |
57DAP/52DAP | 0.95794 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85514 | 0.115 |
17DAP/reference | 0.91159 | 0.26 |
27DAP/reference | 1.03658 | 0.794 |
39DAP/reference | 1.0145 | 0.889 |
41DAP/reference | 1.00431 | 1 |
42DAP/reference | 0.90725 | 0.064 |
43DAP/reference | 0.97441 | 0.708 |
47DAP/reference | 1.00121 | 0.674 |
52DAP/reference | 0.97746 | 0.53 |
57DAP/reference | 1.04377 | 0.704 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09771 | 0.438 |
27DAP/17DAP | 0.98148 | 0.919 |
39DAP/27DAP | 0.95763 | 0.754 |
41DAP/39DAP | 1.02391 | 1 |
42DAP/41DAP | 1.12346 | 0.824 |
43DAP/42DAP | 1.60975 | 0.015 |
47DAP/43DAP | 1.10181 | 0.749 |
52DAP/47DAP | 1.17698 | 0.494 |
57DAP/52DAP | 1.12149 | 0.627 |
57DAP/7DAP | 2.12777 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9282 | 0.296 |
17DAP/reference | 1.04404 | 0.822 |
27DAP/reference | 1.18469 | 0.301 |
39DAP/reference | 1.16272 | 0.297 |
41DAP/reference | 1.05455 | 0.791 |
42DAP/reference | 1.35116 | 0.046 |
43DAP/reference | 1.00208 | 0.694 |
47DAP/reference | 0.93335 | 0.504 |
52DAP/reference | 0.80294 | 0.061 |
57DAP/reference | 0.98489 | 0.53 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9792 | 0.77 |
17DAP/reference | 0.95893 | 0.499 |
27DAP/reference | 0.86329 | 0.134 |
39DAP/reference | 0.89376 | 0.159 |
41DAP/reference | 0.9348 | 0.118 |
42DAP/reference | 0.92185 | 0.15 |
43DAP/reference | 0.96935 | 0.539 |
47DAP/reference | 0.99791 | 0.749 |
52DAP/reference | 1.04499 | 0.838 |
57DAP/reference | 0.97478 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95863 | 0.391 |
17DAP/reference | 0.98397 | 0.696 |
27DAP/reference | 1.05185 | 0.871 |
39DAP/reference | 0.9239 | 0.36 |
41DAP/reference | 0.91022 | 0.293 |
42DAP/reference | 1.09403 | 0.443 |
43DAP/reference | 0.79104 | 0.066 |
47DAP/reference | 0.96758 | 0.509 |
52DAP/reference | 1.07522 | 0.946 |
57DAP/reference | 0.87692 | 0.154 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09544 | 0.966 |
26DAP/20DAP | 1.23772 | 0.223 |
34DAP/26DAP | 1.3303 | 1 |
51DAP/34DAP | 1.03683 | 0.949 |
52DAP/51DAP | 0.76876 | 1 |
53DAP/52DAP | 1.22931 | 0.678 |
55DAP/53DAP | 1.29579 | 0.252 |
57DAP/55DAP | 1.58151 | 0.947 |
62DAP/57DAP | 5.48244 | 0.723 |
68DAP/62DAP | 1.47735 | 0.472 |
68DAP/14DAP | 0.89864 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.48997 | 0.061 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81392 | |
Mature Green Tomato/Ripe Tomato | 0.75801 | 0.256 |
Immature Eggplant/Mature Eggplant | 0.33997 | |
Ripe Pepper/Ripe Tomato | 0.93381 | |
Mature Eggplant/Ripe Tomato | 1.3883 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 2.06988 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.74612 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.69393 | |
3-2/M82 | 2.20254 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 2.63684 | |
4-3-2/M82 | 1.19954 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.94226 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.20622 | |
7-1/M82 | 1.08371 | |
7-2/M82 | 1.26626 | |
9-3-2/M82 | 1.25392 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.33166 | |
IL2-6/WTpooled | 0.7523 | 0.473 |
IL7-5/WTpooled | 0.22296 | |
IL7-3/WTpooled | 1.19586 | 1 |
IL12-4/WTpooled | 0.85472 | 0.71 |
IL1-4/WTpooled | 1.02132 | 1 |
WT/WTpooled | 1.02307 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.76085 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.23652 | 0.921 |
DC3000/delta hrp 6h | 1.04622 | 1 |
DC3000/delta hrp 12h | 0.99557 | 1 |
DC3000/delta hrp 24h | 1.46465 | 0.308 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.61719 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00894 | 1 |
Exp 36h | 1.89594 | 1 |
Exp 60h | 1.06978 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.09989 | 1 |
Var 0h | 0.95997 | 1 |
Var 12h I row2-row1 | 0.98897 | 1 |
Var 12h NI row2-row1 | 0.98611 | 0.906 |
Var 36h I row2-row1 | 1.14622 | 1 |
Var 36h NI row2-row1 | 0.81818 | 0.645 |
Var 60h I row2-row1 | 1.0424 | 1 |
Var 60h NI row2-row1 | 0.98852 | 1 |
Time course 0hI-0hNI | 0.95915 | 0.709 |
Time course 12hI-12hNI | 1.04484 | 0.65 |
Time course 36hI-36hNI | 0.90151 | 0.104 |
Time course 60hI-60hNI | 0.57799 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.21543 | 0.221 |
transgenic ySAMdc/azygous control (breaker) | 1.34081 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.91459 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04571 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86015 | 1 |
Manapal/WT (break) | 0.98404 | 1 |
Manapal/WT (red) | 0.69572 | 0.181 |
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