Expression of 1-1-1.3.9.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78572 | 0.586 |
27DAP/17DAP | 0.75729 | 0.609 |
39DAP/27DAP | 1.13914 | 0.961 |
41DAP/39DAP | 0.72997 | 0.191 |
42DAP/41DAP | 0.76493 | 0.774 |
43DAP/42DAP | 1.6453 | 0.587 |
47DAP/43DAP | 0.59069 | 0.08 |
52DAP/47DAP | 1.02247 | 0.88 |
57DAP/52DAP | 1.54254 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.00497 | 0.957 |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.03864 | 1 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.27367 | 0.404 |
52DAP/reference | 0.3432 | 0.029 |
57DAP/reference | 1.80335 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79893 | 0.26 |
27DAP/17DAP | 1.35327 | 0.523 |
39DAP/27DAP | 1.99146 | 0.056 |
41DAP/39DAP | 1.08783 | 1 |
42DAP/41DAP | 1.6216 | 0.47 |
43DAP/42DAP | 1.36539 | 0.176 |
47DAP/43DAP | 0.6445 | 0.569 |
52DAP/47DAP | 0.85793 | 0.22 |
57DAP/52DAP | 0.63401 | |
57DAP/7DAP | 0.89947 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.42771 | |
17DAP/reference | 5.50315 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 4.66751 | |
41DAP/reference | 0.70216 | |
42DAP/reference | 1.27329 | |
43DAP/reference | 2.69231 | |
47DAP/reference | 1.29721 | |
52DAP/reference | 1.03738 | 0.802 |
57DAP/reference | N/A | N/A |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.60496 | 0.064 |
17DAP/reference | 0.87897 | 0.214 |
27DAP/reference | 0.97356 | 0.598 |
39DAP/reference | 0.79766 | 0.359 |
41DAP/reference | 0.99267 | 0.481 |
42DAP/reference | 1.1392 | 0.969 |
43DAP/reference | 0.99191 | 0.846 |
47DAP/reference | 1.16687 | 0.639 |
52DAP/reference | 1.07504 | |
57DAP/reference | 0.48291 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.14162 | |
17DAP/reference | 0.42233 | |
27DAP/reference | 0.28563 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.58433 | |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.40576 | |
47DAP/reference | 0.43484 | |
52DAP/reference | 0.52222 | |
57DAP/reference | 1.55971 | 0.694 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.28557 | 0.966 |
26DAP/20DAP | 0.92218 | 1 |
34DAP/26DAP | 3.44227 | |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.00944 | 0.965 |
53DAP/52DAP | 0.99392 | 0.96 |
55DAP/53DAP | 0.84334 | 0.604 |
57DAP/55DAP | 0.47228 | 0.068 |
62DAP/57DAP | 0.31489 | |
68DAP/62DAP | 1.12936 | |
68DAP/14DAP | 0.68587 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83759 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.90899 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94252 | 1 |
IL12-4/WTpooled | 1.0061 | 1 |
IL1-4/WTpooled | 0.75684 | 0.444 |
WT/WTpooled | 1.00279 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.00414 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.21353 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.65414 | 1 |
Manapal/WT (red) | N/A | N/A |
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