Expression of 1-1-1.3.9.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.785720.586
27DAP/17DAP0.757290.609
39DAP/27DAP1.139140.961
41DAP/39DAP0.729970.191
42DAP/41DAP0.764930.774
43DAP/42DAP1.64530.587
47DAP/43DAP0.590690.08
52DAP/47DAP1.022470.88
57DAP/52DAP1.542540.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference1.004970.957
41DAP/referenceN/AN/A
42DAP/reference1.038641
43DAP/referenceN/AN/A
47DAP/reference1.273670.404
52DAP/reference0.34320.029
57DAP/reference1.80335

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.798930.26
27DAP/17DAP1.353270.523
39DAP/27DAP1.991460.056
41DAP/39DAP1.087831
42DAP/41DAP1.62160.47
43DAP/42DAP1.365390.176
47DAP/43DAP0.64450.569
52DAP/47DAP0.857930.22
57DAP/52DAP0.63401
57DAP/7DAP0.89947

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.42771
17DAP/reference5.50315
27DAP/referenceN/AN/A
39DAP/reference4.66751
41DAP/reference0.70216
42DAP/reference1.27329
43DAP/reference2.69231
47DAP/reference1.29721
52DAP/reference1.037380.802
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.604960.064
17DAP/reference0.878970.214
27DAP/reference0.973560.598
39DAP/reference0.797660.359
41DAP/reference0.992670.481
42DAP/reference1.13920.969
43DAP/reference0.991910.846
47DAP/reference1.166870.639
52DAP/reference1.07504
57DAP/reference0.482910.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.14162
17DAP/reference0.42233
27DAP/reference0.28563
39DAP/referenceN/AN/A
41DAP/reference0.58433
42DAP/referenceN/AN/A
43DAP/reference1.40576
47DAP/reference0.43484
52DAP/reference0.52222
57DAP/reference1.559710.694

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.285570.966
26DAP/20DAP0.922181
34DAP/26DAP3.44227
51DAP/34DAPN/AN/A
52DAP/51DAP1.009440.965
53DAP/52DAP0.993920.96
55DAP/53DAP0.843340.604
57DAP/55DAP0.472280.068
62DAP/57DAP0.31489
68DAP/62DAP1.12936
68DAP/14DAP0.68587

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.83759

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.908991
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.942521
IL12-4/WTpooled1.00611
IL1-4/WTpooled0.756840.444
WT/WTpooled1.002791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.004141
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.213531

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.654141
Manapal/WT (red)N/AN/A