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Expression of 1-1-1.3.9.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.261840.709
27DAP/17DAP1.094170.9
39DAP/27DAP0.760720.376
41DAP/39DAP1.345890.293
42DAP/41DAP1.001421
43DAP/42DAP0.939430.877
47DAP/43DAP1.107490.825
52DAP/47DAP0.992540.92
57DAP/52DAP0.939960.938

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.981660.601
17DAP/reference1.045710.229
27DAP/reference0.961190.395
39DAP/reference1.030120.368
41DAP/reference1.012170.759
42DAP/reference0.904050.019
43DAP/reference0.999380.924
47DAP/reference0.923230.03
52DAP/reference0.838980.047
57DAP/reference0.798250.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.013131
27DAP/17DAP1.048730.885
39DAP/27DAP0.986720.919
41DAP/39DAP0.993911
42DAP/41DAP1.03070.824
43DAP/42DAP1.039420.513
47DAP/43DAP0.983080.909
52DAP/47DAP1.011470.973
57DAP/52DAP0.960580.584
57DAP/7DAP1.301720.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08070.6
17DAP/reference1.116210.123
27DAP/reference1.334590.009
39DAP/reference1.499930.006
41DAP/reference1.246780.109
42DAP/reference1.460120.007
43DAP/reference1.535490.007
47DAP/reference1.330540.083
52DAP/reference1.769650.007
57DAP/reference1.699720.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.088990.043
17DAP/reference1.060020.584
27DAP/reference0.983930.576
39DAP/reference0.97490.455
41DAP/reference0.87530.01
42DAP/reference0.901190.039
43DAP/reference1.010091
47DAP/reference0.871280.028
52DAP/reference1.027250.629
57DAP/reference1.135880.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.060720.469
17DAP/reference0.979770.681
27DAP/reference1.048850.408
39DAP/reference1.408310.013
41DAP/reference1.179110.115
42DAP/reference1.150170.416
43DAP/reference1.104520.617
47DAP/reference0.92220.269
52DAP/reference1.259680.257
57DAP/reference0.804890.174

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.015190.966
26DAP/20DAP0.966331
34DAP/26DAP0.904340.498
51DAP/34DAP1.035440.869
52DAP/51DAP0.989091
53DAP/52DAPN/AN/A
55DAP/53DAP0.983410.886
57DAP/55DAP1.057630.906
62DAP/57DAP1.170810.081
68DAP/62DAP0.978840.834
68DAP/14DAP0.791230.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.975670.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.035151
Mature Green Tomato/Ripe Tomato0.82530.256
Immature Eggplant/Mature Eggplant1.15573N/A
Ripe Pepper/Ripe Tomato1.419241
Mature Eggplant/Ripe Tomato1.744221

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.975030.944
1-1-2/M820.918711
12-2/M820.990721
12-4/M821.01331
1-3/M820.759360.441
2-1-1/M821.05541
2-1/M82N/AN/A
2-6/M821.202660.505
3-2/M82N/AN/A
4-1-1/M820.898351
4-1/M820.86890.737
4-3-2/M820.805680.698
4-3/M820.728850.388
5-3/M820.971231
6-2/M821.078971
6-3/M820.975891
7-1/M821.01654N/A
7-2/M821.005991
9-3-2/M820.788840.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.6841N/A
IL2-6/WTpooled0.970551
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.16161
IL12-4/WTpooled1.114430.737
IL1-4/WTpooled1.00818N/A
WT/WTpooled0.952321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.034591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.061450.894
DC3000/delta hrp 6h1.005021
DC3000/delta hrp 12h0.951651
DC3000/delta hrp 24h1.068840.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.132170.183
DC3000 delta B/DC3000 delta AB1.098470.318

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.065121
Exp 36h1.159231
Exp 60h1.474160.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991681
Var 0h0.967610.933
Var 12h I row2-row10.975380.948
Var 12h NI row2-row11.003161
Var 36h I row2-row10.875761
Var 36h NI row2-row10.910650.31
Var 60h I row2-row10.977080.832
Var 60h NI row2-row11.068960.904
Time course 0hI-0hNI1.088220.764
Time course 12hI-12hNI1.086030.409
Time course 36hI-36hNI1.310890.005
Time course 60hI-60hNI1.943320.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.965830.485
transgenic ySAMdc/azygous control (breaker)0.950931
transgenic ySAMdc/azygous control (red)0.946051

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974540.054

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.90960.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.139150.105
Manapal/WT (break)0.984681
Manapal/WT (red)0.574630.181