Expression of 1-1-1.4.1.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.727630.226
27DAP/17DAP1.797140.92
39DAP/27DAP1.341640.899
41DAP/39DAP1.160810.938
42DAP/41DAP1.454080.773
43DAP/42DAP1.511030.835
47DAP/43DAP1.341610.689
52DAP/47DAP1.219760.869
57DAP/52DAP0.605470.513

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.379440.024
17DAP/reference0.7863
27DAP/reference0.52784
39DAP/reference0.53370.004
41DAP/reference1.120521
42DAP/reference1.121361
43DAP/reference1.003550.942
47DAP/reference1.332710.84
52DAP/reference0.842810.23
57DAP/reference0.952180.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.921880.578
27DAP/17DAP1.193330.377
39DAP/27DAP1.39270.353
41DAP/39DAP1.248440.705
42DAP/41DAP1.122220.924
43DAP/42DAP1.101871
47DAP/43DAP1.294150.552
52DAP/47DAP0.971340.901
57DAP/52DAP0.966070.732
57DAP/7DAP0.253481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.660680.069
17DAP/reference0.601810.013
27DAP/reference0.799810.037
39DAP/reference0.667570.017
41DAP/reference0.882180.203
42DAP/reference0.706710.016
43DAP/reference0.745440.031
47DAP/reference0.772250.293
52DAP/reference0.748460.038
57DAP/reference0.916360.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992390.951
17DAP/reference1.50022
27DAP/reference0.66118
39DAP/reference0.22847
41DAP/reference1.64156
42DAP/reference1.93042
43DAP/reference0.97927
47DAP/reference0.08026
52DAP/reference1.046230.761
57DAP/reference0.59299

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.71470.029
17DAP/reference1.362750.839
27DAP/reference0.760570.035
39DAP/reference0.773840.063
41DAP/reference1.017561
42DAP/reference1.022941
43DAP/reference0.878560.305
47DAP/referenceN/AN/A
52DAP/reference0.79680.142
57DAP/reference0.969690.742

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.832081
26DAP/20DAP1.51269
34DAP/26DAP1.14596
51DAP/34DAP0.545770.081
52DAP/51DAP0.9233
53DAP/52DAP0.841490.677
55DAP/53DAP1.251320.634
57DAP/55DAPN/AN/A
62DAP/57DAP1.51736
68DAP/62DAP0.84669
68DAP/14DAP3.2715

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.209330.365
IL2-6/WTpooled1.655250.531
IL7-5/WTpooled0.455321
IL7-3/WTpooled0.792480.31
IL12-4/WTpooled1.024081
IL1-4/WTpooled1.275730.426
WT/WTpooled1.08851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A