Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.4.1.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.08882	0.876
27DAP/17DAP	0.69637	0.298
39DAP/27DAP	1.32877	0.91
41DAP/39DAP	0.69292	0.32
42DAP/41DAP	1.50603	0.485
43DAP/42DAP	1.57323	0.123
47DAP/43DAP	1.37858	0.769
52DAP/47DAP	1.31631	0.96
57DAP/52DAP	1.01383	0.919

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06472	0.693
17DAP/reference	1.29638	0.045
27DAP/reference	1.54146	0.098
39DAP/reference	0.86873	0.35
41DAP/reference	0.91193	0.267
42DAP/reference	1.29613	0.013
43DAP/reference	0.69307	0.519
47DAP/reference	1.22506	0.963
52DAP/reference	0.70206	0.223
57DAP/reference	0.32092

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.34151
27DAP/17DAP	N/A	N/A
39DAP/27DAP	1.68455	0.044
41DAP/39DAP	0.36228
42DAP/41DAP	1.22246	0.999
43DAP/42DAP	1.52351	0.192
47DAP/43DAP	0.82419	0.046
52DAP/47DAP	1.14692	0.892
57DAP/52DAP	2.191
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85297	0.129
17DAP/reference	0.93134	0.338
27DAP/reference	1.08059	0.551
39DAP/reference	0.86928	0.126
41DAP/reference	0.74823	0.037
42DAP/reference	0.71802	0.016
43DAP/reference	0.94772	0.305
47DAP/reference	0.97379	0.079
52DAP/reference	0.93351	0.278
57DAP/reference	0.81093	0.042

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.40582	0.009
17DAP/reference	1.65412
27DAP/reference	0.69694	0.007
39DAP/reference	0.47734	0.122
41DAP/reference	0.68013
42DAP/reference	N/A	N/A
43DAP/reference	0.85696	0.45
47DAP/reference	0.86697	0.075
52DAP/reference	1.58447	0.789
57DAP/reference	0.96005	0.789

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99425	0.699
17DAP/reference	1.17761	0.412
27DAP/reference	1.00902	0.843
39DAP/reference	1.23812	0.104
41DAP/reference	0.8563	0.293
42DAP/reference	1.21261	0.272
43DAP/reference	1.0057	0.827
47DAP/reference	N/A	N/A
52DAP/reference	3.59332	0.463
57DAP/reference	1.15171	0.939

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.11506	0.966
26DAP/20DAP	0.80543
34DAP/26DAP	0.69197	0.575
51DAP/34DAP	0.78222
52DAP/51DAP	1.51465
53DAP/52DAP	0.78329	0.374
55DAP/53DAP	0.82361	0.577
57DAP/55DAP	0.68149	0.159
62DAP/57DAP	N/A	N/A
68DAP/62DAP	N/A	N/A
68DAP/14DAP	2.9088	0.071

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.97128

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.19339	0.493
IL2-6/WTpooled	1.05308	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.09389
IL12-4/WTpooled	0.75072
IL1-4/WTpooled	1.08138	1
WT/WTpooled	0.80878	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	0.14157

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A