Expression of 1-1-1.4.10.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.738010.187
27DAP/17DAP0.366230.027
39DAP/27DAP0.677130.378
41DAP/39DAP0.9760.854
42DAP/41DAP1.182470.888
43DAP/42DAP0.682380.601
47DAP/43DAP0.924140.68
52DAP/47DAP1.475980.676
57DAP/52DAP0.938920.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.399190.052
17DAP/reference0.595330.009
27DAP/reference0.69710.036
39DAP/reference0.712950.026
41DAP/reference0.549540.009
42DAP/reference0.604320.002
43DAP/reference0.491990.013
47DAP/reference0.558940.001
52DAP/reference0.470770.023
57DAP/reference0.582140.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.359780.023
27DAP/17DAP1.069980.826
39DAP/27DAP0.736410.058
41DAP/39DAP0.917330.804
42DAP/41DAP0.875980.362
43DAP/42DAP0.782840.105
47DAP/43DAP1.035240.886
52DAP/47DAP1.044830.979
57DAP/52DAP1.130810.483
57DAP/7DAP0.650481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997660.758
17DAP/reference1.453430.022
27DAP/reference1.644640.007
39DAP/reference2.178570.005
41DAP/reference2.378330.025
42DAP/reference2.655940.007
43DAP/reference3.054280.011
47DAP/reference1.23090.671
52DAP/reference2.171990.025
57DAP/reference1.312630.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.304510.265
17DAP/reference0.811750.008
27DAP/reference0.629940.015
39DAP/reference0.54540.01
41DAP/reference0.791820.06
42DAP/reference0.594210.01
43DAP/reference0.292780.002
47DAP/reference0.531330.01
52DAP/reference0.475330.003
57DAP/reference0.45130.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.550990.062
17DAP/reference1.086520.966
27DAP/reference1.402790.067
39DAP/reference1.222420.307
41DAP/reference1.28860.605
42DAP/reference1.027381
43DAP/reference1.22090.88
47DAP/reference0.442110.004
52DAP/reference1.150520.623
57DAP/reference0.846460.187

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989951
26DAP/20DAP1.030821
34DAP/26DAP1.250241
51DAP/34DAP1.033880.988
52DAP/51DAP1.189030.676
53DAP/52DAP1.024360.944
55DAP/53DAP1.191191
57DAP/55DAP0.881090.527
62DAP/57DAP0.983530.994
68DAP/62DAP1.336520.792
68DAP/14DAP1.088370.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.275510.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.994850.058
Mature Green Tomato/Ripe Tomato10.02920.015
Immature Eggplant/Mature Eggplant0.56360.062
Ripe Pepper/Ripe Tomato0.661620.224
Mature Eggplant/Ripe Tomato3.65576

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.06989
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.312270.277
IL2-6/WTpooled0.969451
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.10781
IL12-4/WTpooled0.847141
IL1-4/WTpooled0.586940.394
WT/WTpooled1.009121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.547891

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.872060.868
DC3000/delta hrp 6h1.012740.95
DC3000/delta hrp 12h0.893041
DC3000/delta hrp 24h7.883430.031

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.472830.057
DC3000 delta B/DC3000 delta AB1.156630.398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.082471
Exp 36h0.734740.589
Exp 60h0.679890.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0571
Var 0h1.550910.374
Var 12h I row2-row10.915620.77
Var 12h NI row2-row10.793380.443
Var 36h I row2-row10.939740.805
Var 36h NI row2-row10.940190.743
Var 60h I row2-row10.926790.832
Var 60h NI row2-row10.948791
Time course 0hI-0hNI0.992181
Time course 12hI-12hNI1.07061
Time course 36hI-36hNI0.77390.027
Time course 60hI-60hNI0.436410.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.01090.748
transgenic ySAMdc/azygous control (breaker)0.795740.251
transgenic ySAMdc/azygous control (red)1.183990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99580.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.335650.223

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.039790.096
Manapal/WT (break)2.078980.13
Manapal/WT (red)N/AN/A