Expression of 1-1-1.4.11.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.161750.755
27DAP/17DAP1.66770.483
39DAP/27DAP1.197680.894
41DAP/39DAP0.98080.949
42DAP/41DAP0.925051
43DAP/42DAP1.013910.937
47DAP/43DAP1.230250.229
52DAP/47DAP1.073420.949
57DAP/52DAP1.278650.694

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.875820.217
17DAP/reference0.983470.737
27DAP/reference1.175270.339
39DAP/reference0.935210.342
41DAP/reference0.99711
42DAP/reference1.042550.812
43DAP/reference1.278380.064
47DAP/reference1.160890.541
52DAP/reference1.013140.768
57DAP/reference1.005470.639

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.092150.87
27DAP/17DAP1.315940.863
39DAP/27DAP1.005930.932
41DAP/39DAP1.202920.719
42DAP/41DAP0.880760.356
43DAP/42DAP1.12320.212
47DAP/43DAP0.738670.108
52DAP/47DAP1.10680.819
57DAP/52DAP1.401750.79
57DAP/7DAP2.321720.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.189440.213
17DAP/reference1.132260.328
27DAP/reference0.992610.614
39DAP/reference0.992440.64
41DAP/reference1.191110.46
42DAP/reference0.972870.436
43DAP/reference0.972810.44
47DAP/reference1.06211
52DAP/reference1.001030.621
57DAP/reference1.166460.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.178950.23
17DAP/reference1.246560.098
27DAP/reference1.232670.345
39DAP/reference0.902960.202
41DAP/reference0.912330.25
42DAP/reference0.839240.108
43DAP/reference1.102950.688
47DAP/reference0.934920.302
52DAP/reference1.038830.938
57DAP/reference1.061980.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.905110.214
17DAP/reference1.124140.572
27DAP/reference0.958080.539
39DAP/reference1.071270.546
41DAP/reference1.064780.867
42DAP/reference1.08890.635
43DAP/reference0.996360.796
47DAP/reference1.180550.018
52DAP/reference1.580.428
57DAP/reference0.811360.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.514610.586
26DAP/20DAP0.842591
34DAP/26DAP1.153641
51DAP/34DAP0.949090.737
52DAP/51DAP1.151230.848
53DAP/52DAP1.177710.25
55DAP/53DAP0.90970.515
57DAP/55DAP0.949610.789
62DAP/57DAP0.964040.994
68DAP/62DAP0.721750.227
68DAP/14DAP1.013141

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.405290.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.926790.256
Immature Eggplant/Mature Eggplant1.90352
Ripe Pepper/Ripe Tomato1.165941
Mature Eggplant/Ripe Tomato0.972041

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.97156
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M821.23239
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.131850.378
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.039460.493
IL2-6/WTpooled1.157690.788
IL7-5/WTpooled0.796031
IL7-3/WTpooled1.064391
IL12-4/WTpooled1.055880.891
IL1-4/WTpooled0.9410.834
WT/WTpooled1.0771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.93630.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.103810.921
DC3000/delta hrp 6h1.079741
DC3000/delta hrp 12h1.001481
DC3000/delta hrp 24h1.098780.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0391
Var 0h0.92661
Var 12h I row2-row11.094330.379
Var 12h NI row2-row11.084030.34
Var 36h I row2-row11.123050.368
Var 36h NI row2-row10.930650.791
Var 60h I row2-row10.966110.952
Var 60h NI row2-row10.807880.932
Time course 0hI-0hNI1.040720.95
Time course 12hI-12hNI0.956520.701
Time course 36hI-36hNI1.126720.166
Time course 60hI-60hNI2.01190.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.91910.454
transgenic ySAMdc/azygous control (breaker)1.372090.166
transgenic ySAMdc/azygous control (red)0.959731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.161690.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.81770.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.038551
Manapal/WT (break)0.878071
Manapal/WT (red)0.945390.728