Expression of 1-1-1.4.11.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16175 | 0.755 |
27DAP/17DAP | 1.6677 | 0.483 |
39DAP/27DAP | 1.19768 | 0.894 |
41DAP/39DAP | 0.9808 | 0.949 |
42DAP/41DAP | 0.92505 | 1 |
43DAP/42DAP | 1.01391 | 0.937 |
47DAP/43DAP | 1.23025 | 0.229 |
52DAP/47DAP | 1.07342 | 0.949 |
57DAP/52DAP | 1.27865 | 0.694 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87582 | 0.217 |
17DAP/reference | 0.98347 | 0.737 |
27DAP/reference | 1.17527 | 0.339 |
39DAP/reference | 0.93521 | 0.342 |
41DAP/reference | 0.9971 | 1 |
42DAP/reference | 1.04255 | 0.812 |
43DAP/reference | 1.27838 | 0.064 |
47DAP/reference | 1.16089 | 0.541 |
52DAP/reference | 1.01314 | 0.768 |
57DAP/reference | 1.00547 | 0.639 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09215 | 0.87 |
27DAP/17DAP | 1.31594 | 0.863 |
39DAP/27DAP | 1.00593 | 0.932 |
41DAP/39DAP | 1.20292 | 0.719 |
42DAP/41DAP | 0.88076 | 0.356 |
43DAP/42DAP | 1.1232 | 0.212 |
47DAP/43DAP | 0.73867 | 0.108 |
52DAP/47DAP | 1.1068 | 0.819 |
57DAP/52DAP | 1.40175 | 0.79 |
57DAP/7DAP | 2.32172 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18944 | 0.213 |
17DAP/reference | 1.13226 | 0.328 |
27DAP/reference | 0.99261 | 0.614 |
39DAP/reference | 0.99244 | 0.64 |
41DAP/reference | 1.19111 | 0.46 |
42DAP/reference | 0.97287 | 0.436 |
43DAP/reference | 0.97281 | 0.44 |
47DAP/reference | 1.0621 | 1 |
52DAP/reference | 1.00103 | 0.621 |
57DAP/reference | 1.16646 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17895 | 0.23 |
17DAP/reference | 1.24656 | 0.098 |
27DAP/reference | 1.23267 | 0.345 |
39DAP/reference | 0.90296 | 0.202 |
41DAP/reference | 0.91233 | 0.25 |
42DAP/reference | 0.83924 | 0.108 |
43DAP/reference | 1.10295 | 0.688 |
47DAP/reference | 0.93492 | 0.302 |
52DAP/reference | 1.03883 | 0.938 |
57DAP/reference | 1.06198 | 0.609 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90511 | 0.214 |
17DAP/reference | 1.12414 | 0.572 |
27DAP/reference | 0.95808 | 0.539 |
39DAP/reference | 1.07127 | 0.546 |
41DAP/reference | 1.06478 | 0.867 |
42DAP/reference | 1.0889 | 0.635 |
43DAP/reference | 0.99636 | 0.796 |
47DAP/reference | 1.18055 | 0.018 |
52DAP/reference | 1.58 | 0.428 |
57DAP/reference | 0.81136 | 0.034 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.51461 | 0.586 |
26DAP/20DAP | 0.84259 | 1 |
34DAP/26DAP | 1.15364 | 1 |
51DAP/34DAP | 0.94909 | 0.737 |
52DAP/51DAP | 1.15123 | 0.848 |
53DAP/52DAP | 1.17771 | 0.25 |
55DAP/53DAP | 0.9097 | 0.515 |
57DAP/55DAP | 0.94961 | 0.789 |
62DAP/57DAP | 0.96404 | 0.994 |
68DAP/62DAP | 0.72175 | 0.227 |
68DAP/14DAP | 1.01314 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.40529 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.92679 | 0.256 |
Immature Eggplant/Mature Eggplant | 1.90352 | |
Ripe Pepper/Ripe Tomato | 1.16594 | 1 |
Mature Eggplant/Ripe Tomato | 0.97204 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.97156 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.23239 | |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.13185 | 0.378 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03946 | 0.493 |
IL2-6/WTpooled | 1.15769 | 0.788 |
IL7-5/WTpooled | 0.79603 | 1 |
IL7-3/WTpooled | 1.06439 | 1 |
IL12-4/WTpooled | 1.05588 | 0.891 |
IL1-4/WTpooled | 0.941 | 0.834 |
WT/WTpooled | 1.077 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9363 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10381 | 0.921 |
DC3000/delta hrp 6h | 1.07974 | 1 |
DC3000/delta hrp 12h | 1.00148 | 1 |
DC3000/delta hrp 24h | 1.09878 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.039 | 1 |
Var 0h | 0.9266 | 1 |
Var 12h I row2-row1 | 1.09433 | 0.379 |
Var 12h NI row2-row1 | 1.08403 | 0.34 |
Var 36h I row2-row1 | 1.12305 | 0.368 |
Var 36h NI row2-row1 | 0.93065 | 0.791 |
Var 60h I row2-row1 | 0.96611 | 0.952 |
Var 60h NI row2-row1 | 0.80788 | 0.932 |
Time course 0hI-0hNI | 1.04072 | 0.95 |
Time course 12hI-12hNI | 0.95652 | 0.701 |
Time course 36hI-36hNI | 1.12672 | 0.166 |
Time course 60hI-60hNI | 2.0119 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9191 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.37209 | 0.166 |
transgenic ySAMdc/azygous control (red) | 0.95973 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16169 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8177 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03855 | 1 |
Manapal/WT (break) | 0.87807 | 1 |
Manapal/WT (red) | 0.94539 | 0.728 |
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