Expression of 1-1-1.4.11.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.51702 | 0.073 |
27DAP/17DAP | 2.12367 | 0.622 |
39DAP/27DAP | 1.0535 | 0.782 |
41DAP/39DAP | 1.13904 | 0.638 |
42DAP/41DAP | 1.49965 | 0.085 |
43DAP/42DAP | 1.00208 | 0.937 |
47DAP/43DAP | 1.3184 | 0.979 |
52DAP/47DAP | 1.28627 | 0.967 |
57DAP/52DAP | 0.99907 | 0.949 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00005 | 1 |
17DAP/reference | 0.62385 | |
27DAP/reference | 0.5993 | |
39DAP/reference | 0.63176 | |
41DAP/reference | 1.30894 | |
42DAP/reference | 1.22458 | 0.045 |
43DAP/reference | 0.38761 | |
47DAP/reference | 1.04144 | 0.72 |
52DAP/reference | 0.60795 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81035 | 0.311 |
27DAP/17DAP | 1.81896 | 0.435 |
39DAP/27DAP | 1.34684 | 0.079 |
41DAP/39DAP | 1.57798 | 0.497 |
42DAP/41DAP | 0.8116 | 0.203 |
43DAP/42DAP | 1.44697 | 0.25 |
47DAP/43DAP | 1.35378 | 0.414 |
52DAP/47DAP | 1.07611 | 0.927 |
57DAP/52DAP | 1.08951 | 0.703 |
57DAP/7DAP | 1.18219 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05741 | 0.91 |
17DAP/reference | 0.87573 | 0.192 |
27DAP/reference | 0.96171 | 0.402 |
39DAP/reference | 0.81081 | 0.056 |
41DAP/reference | 0.87354 | 0.047 |
42DAP/reference | 0.84646 | 0.095 |
43DAP/reference | 0.8722 | 0.064 |
47DAP/reference | 1.11496 | 1 |
52DAP/reference | 0.9618 | 0.435 |
57DAP/reference | 1.11651 | 0.268 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38478 | 0.23 |
17DAP/reference | 3.64779 | |
27DAP/reference | 0.85918 | 0.452 |
39DAP/reference | 0.61319 | |
41DAP/reference | 0.88063 | |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.5835 | 0.522 |
47DAP/reference | 1.00431 | 0.695 |
52DAP/reference | 0.06118 | |
57DAP/reference | 1.00016 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90407 | 0.362 |
17DAP/reference | 1.14815 | 0.474 |
27DAP/reference | 1.10601 | 0.237 |
39DAP/reference | 0.99992 | 1 |
41DAP/reference | 1.03373 | 0.796 |
42DAP/reference | 0.83821 | 0.134 |
43DAP/reference | 0.76263 | 0.294 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.80987 | 0.137 |
57DAP/reference | 1.12 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94871 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.62993 | 0.542 |
51DAP/34DAP | 0.6042 | 0.274 |
52DAP/51DAP | 0.57637 | 1 |
53DAP/52DAP | 1.11687 | 1 |
55DAP/53DAP | 1.32091 | 0.939 |
57DAP/55DAP | 0.86625 | 0.545 |
62DAP/57DAP | 0.67608 | 0.28 |
68DAP/62DAP | 1.44488 | 0.845 |
68DAP/14DAP | 1.30333 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 12.9889 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.1929 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.56764 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.92314 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06324 | 1 |
IL12-4/WTpooled | 0.92904 | 1 |
IL1-4/WTpooled | 0.87735 | |
WT/WTpooled | 0.9576 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.52154 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9719 | 1 |
DC3000/delta hrp 6h | 0.69247 | |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.74243 | 0.049 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.47461 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.37989 | 0.159 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.36502 | 1 |
Exp 60h | 1.12524 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05535 | |
Var 0h | 1.09767 | 0.936 |
Var 12h I row2-row1 | 0.96138 | 0.705 |
Var 12h NI row2-row1 | 1.37661 | 0.235 |
Var 36h I row2-row1 | 1.15502 | 0.305 |
Var 36h NI row2-row1 | 0.50786 | 0.378 |
Var 60h I row2-row1 | 0.92713 | 0.952 |
Var 60h NI row2-row1 | 0.75894 | 0.301 |
Time course 0hI-0hNI | 0.81955 | 0.144 |
Time course 12hI-12hNI | 1.84564 | 0.005 |
Time course 36hI-36hNI | 2.26406 | 0.007 |
Time course 60hI-60hNI | 5.55049 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.63772 | 0.096 |
Manapal/WT (break) | 1.23389 | 1 |
Manapal/WT (red) | 0.58062 | 0.216 |
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