Expression of 1-1-1.4.11.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.517020.073
27DAP/17DAP2.123670.622
39DAP/27DAP1.05350.782
41DAP/39DAP1.139040.638
42DAP/41DAP1.499650.085
43DAP/42DAP1.002080.937
47DAP/43DAP1.31840.979
52DAP/47DAP1.286270.967
57DAP/52DAP0.999070.949

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.000051
17DAP/reference0.62385
27DAP/reference0.5993
39DAP/reference0.63176
41DAP/reference1.30894
42DAP/reference1.224580.045
43DAP/reference0.38761
47DAP/reference1.041440.72
52DAP/reference0.60795
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.810350.311
27DAP/17DAP1.818960.435
39DAP/27DAP1.346840.079
41DAP/39DAP1.577980.497
42DAP/41DAP0.81160.203
43DAP/42DAP1.446970.25
47DAP/43DAP1.353780.414
52DAP/47DAP1.076110.927
57DAP/52DAP1.089510.703
57DAP/7DAP1.18219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057410.91
17DAP/reference0.875730.192
27DAP/reference0.961710.402
39DAP/reference0.810810.056
41DAP/reference0.873540.047
42DAP/reference0.846460.095
43DAP/reference0.87220.064
47DAP/reference1.114961
52DAP/reference0.96180.435
57DAP/reference1.116510.268

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.384780.23
17DAP/reference3.64779
27DAP/reference0.859180.452
39DAP/reference0.61319
41DAP/reference0.88063
42DAP/referenceN/AN/A
43DAP/reference1.58350.522
47DAP/reference1.004310.695
52DAP/reference0.06118
57DAP/reference1.00016

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.904070.362
17DAP/reference1.148150.474
27DAP/reference1.106010.237
39DAP/reference0.999921
41DAP/reference1.033730.796
42DAP/reference0.838210.134
43DAP/reference0.762630.294
47DAP/referenceN/AN/A
52DAP/reference0.809870.137
57DAP/reference1.12

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.948711
26DAP/20DAPN/AN/A
34DAP/26DAP1.629930.542
51DAP/34DAP0.60420.274
52DAP/51DAP0.576371
53DAP/52DAP1.116871
55DAP/53DAP1.320910.939
57DAP/55DAP0.866250.545
62DAP/57DAP0.676080.28
68DAP/62DAP1.444880.845
68DAP/14DAP1.30333

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker12.98890.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.1929
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.56764

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.923141
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.063241
IL12-4/WTpooled0.929041
IL1-4/WTpooled0.87735
WT/WTpooled0.95761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.521541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97191
DC3000/delta hrp 6h0.69247
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.742430.049

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.474610.042
DC3000 delta B/DC3000 delta AB1.379890.159

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.365021
Exp 60h1.125241

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.05535
Var 0h1.097670.936
Var 12h I row2-row10.961380.705
Var 12h NI row2-row11.376610.235
Var 36h I row2-row11.155020.305
Var 36h NI row2-row10.507860.378
Var 60h I row2-row10.927130.952
Var 60h NI row2-row10.758940.301
Time course 0hI-0hNI0.819550.144
Time course 12hI-12hNI1.845640.005
Time course 36hI-36hNI2.264060.007
Time course 60hI-60hNI5.550490.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.637720.096
Manapal/WT (break)1.233891
Manapal/WT (red)0.580620.216