Expression of 1-1-1.4.12.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.20133 | 0.124 |
27DAP/17DAP | 0.74393 | 0.341 |
39DAP/27DAP | 0.92373 | 0.62 |
41DAP/39DAP | 0.63824 | 0.06 |
42DAP/41DAP | 0.91192 | 1 |
43DAP/42DAP | 0.97459 | 0.918 |
47DAP/43DAP | 0.83197 | 0.496 |
52DAP/47DAP | 0.99573 | 0.889 |
57DAP/52DAP | 0.88385 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.63705 | 0.177 |
17DAP/reference | 0.66652 | 0.194 |
27DAP/reference | 0.43261 | 0.052 |
39DAP/reference | 0.82133 | 0.467 |
41DAP/reference | 0.76369 | 0.201 |
42DAP/reference | 0.84294 | 0.278 |
43DAP/reference | 1.02452 | 0.691 |
47DAP/reference | 0.7248 | 0.258 |
52DAP/reference | 1.01135 | 0.461 |
57DAP/reference | 0.77574 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87382 | 0.363 |
27DAP/17DAP | 1.41439 | 0.066 |
39DAP/27DAP | 0.59821 | 0.028 |
41DAP/39DAP | 0.87164 | 0.495 |
42DAP/41DAP | 1.12448 | 0.719 |
43DAP/42DAP | 0.96437 | 0.665 |
47DAP/43DAP | 0.80668 | 0.039 |
52DAP/47DAP | 0.89304 | 0.677 |
57DAP/52DAP | 0.88302 | 0.198 |
57DAP/7DAP | 0.42972 | 0.157 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44305 | 0.112 |
17DAP/reference | 1.07968 | 0.399 |
27DAP/reference | 1.17304 | 0.16 |
39DAP/reference | 1.08516 | 0.149 |
41DAP/reference | 1.1306 | 0.215 |
42DAP/reference | 1.03231 | 1 |
43DAP/reference | 0.91035 | 0.046 |
47DAP/reference | 1.03892 | 0.885 |
52DAP/reference | 1.18451 | 0.092 |
57DAP/reference | 1.09928 | 0.198 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.424 | |
17DAP/reference | 1.70836 | 0.007 |
27DAP/reference | 2.11294 | |
39DAP/reference | 1.0939 | |
41DAP/reference | 1.41234 | 0.705 |
42DAP/reference | 0.81186 | |
43DAP/reference | 0.90617 | 0.404 |
47DAP/reference | 0.77836 | 0.261 |
52DAP/reference | 0.90553 | 0.407 |
57DAP/reference | 1.02674 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28045 | 0.103 |
17DAP/reference | 1.01788 | 0.81 |
27DAP/reference | 0.97297 | 0.539 |
39DAP/reference | 1.01753 | 0.858 |
41DAP/reference | 1.03358 | 0.84 |
42DAP/reference | 0.99335 | 0.816 |
43DAP/reference | 0.91754 | 0.256 |
47DAP/reference | 0.83965 | 0.306 |
52DAP/reference | 1.25509 | 0.301 |
57DAP/reference | 0.81702 | 0.098 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99413 | 1 |
26DAP/20DAP | 1.03616 | 1 |
34DAP/26DAP | 1.03326 | 1 |
51DAP/34DAP | 1.71614 | 0.159 |
52DAP/51DAP | 1.04158 | 0.836 |
53DAP/52DAP | 2.2599 | 0.025 |
55DAP/53DAP | 1.50726 | 0.136 |
57DAP/55DAP | 0.97375 | 0.703 |
62DAP/57DAP | 0.78472 | 0.466 |
68DAP/62DAP | 1.34699 | 1 |
68DAP/14DAP | 2.5695 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.55196 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 3.52291 | 0.016 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00764 | 1 |
1-1-2/M82 | 0.99495 | 1 |
12-2/M82 | 1.10068 | 0.61 |
12-4/M82 | 1.20761 | 1 |
1-3/M82 | 1.12966 | |
2-1-1/M82 | 1.46194 | 0.332 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94816 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.99668 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.14829 | |
4-3/M82 | 1.00632 | 1 |
5-3/M82 | 0.98494 | 1 |
6-2/M82 | 0.96381 | |
6-3/M82 | 0.99173 | 1 |
7-1/M82 | 1.27917 | |
7-2/M82 | 1.05956 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.38923 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02921 | 1 |
IL12-4/WTpooled | 1.02527 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 0.86667 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.42785 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00974 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.80739 | 1 |
DC3000/delta hrp 24h | 1.01672 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08049 | 0.515 |
DC3000 delta B/DC3000 delta AB | 1.12115 | 0.535 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99272 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.79218 | 0.338 |
Var 12h NI row2-row1 | 1.03976 | 1 |
Var 36h I row2-row1 | 0.85864 | 0.805 |
Var 36h NI row2-row1 | 1.56537 | 1 |
Var 60h I row2-row1 | 0.6985 | 0.285 |
Var 60h NI row2-row1 | 0.89223 | 0.408 |
Time course 0hI-0hNI | 0.96005 | 0.745 |
Time course 12hI-12hNI | 0.73467 | 0.033 |
Time course 36hI-36hNI | 0.8988 | 0.166 |
Time course 60hI-60hNI | 1.34677 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.00488 | 1 |
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