Expression of 1-1-1.4.12.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.201330.124
27DAP/17DAP0.743930.341
39DAP/27DAP0.923730.62
41DAP/39DAP0.638240.06
42DAP/41DAP0.911921
43DAP/42DAP0.974590.918
47DAP/43DAP0.831970.496
52DAP/47DAP0.995730.889
57DAP/52DAP0.883850.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.637050.177
17DAP/reference0.666520.194
27DAP/reference0.432610.052
39DAP/reference0.821330.467
41DAP/reference0.763690.201
42DAP/reference0.842940.278
43DAP/reference1.024520.691
47DAP/reference0.72480.258
52DAP/reference1.011350.461
57DAP/reference0.775740.165

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.873820.363
27DAP/17DAP1.414390.066
39DAP/27DAP0.598210.028
41DAP/39DAP0.871640.495
42DAP/41DAP1.124480.719
43DAP/42DAP0.964370.665
47DAP/43DAP0.806680.039
52DAP/47DAP0.893040.677
57DAP/52DAP0.883020.198
57DAP/7DAP0.429720.157

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.443050.112
17DAP/reference1.079680.399
27DAP/reference1.173040.16
39DAP/reference1.085160.149
41DAP/reference1.13060.215
42DAP/reference1.032311
43DAP/reference0.910350.046
47DAP/reference1.038920.885
52DAP/reference1.184510.092
57DAP/reference1.099280.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.424
17DAP/reference1.708360.007
27DAP/reference2.11294
39DAP/reference1.0939
41DAP/reference1.412340.705
42DAP/reference0.81186
43DAP/reference0.906170.404
47DAP/reference0.778360.261
52DAP/reference0.905530.407
57DAP/reference1.026740.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.280450.103
17DAP/reference1.017880.81
27DAP/reference0.972970.539
39DAP/reference1.017530.858
41DAP/reference1.033580.84
42DAP/reference0.993350.816
43DAP/reference0.917540.256
47DAP/reference0.839650.306
52DAP/reference1.255090.301
57DAP/reference0.817020.098

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.994131
26DAP/20DAP1.036161
34DAP/26DAP1.033261
51DAP/34DAP1.716140.159
52DAP/51DAP1.041580.836
53DAP/52DAP2.25990.025
55DAP/53DAP1.507260.136
57DAP/55DAP0.973750.703
62DAP/57DAP0.784720.466
68DAP/62DAP1.346991
68DAP/14DAP2.5695

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.551960.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato3.522910.016
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007641
1-1-2/M820.994951
12-2/M821.100680.61
12-4/M821.207611
1-3/M821.12966
2-1-1/M821.461940.332
2-1/M82N/AN/A
2-6/M820.948161
3-2/M82N/AN/A
4-1-1/M820.99668
4-1/M82N/AN/A
4-3-2/M821.14829
4-3/M821.006321
5-3/M820.984941
6-2/M820.96381
6-3/M820.991731
7-1/M821.27917
7-2/M821.059561
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.389230.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.029211
IL12-4/WTpooled1.02527
IL1-4/WTpooledN/AN/A
WT/WTpooled0.866671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.427850.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009740.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.807391
DC3000/delta hrp 24h1.016720.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.080490.515
DC3000 delta B/DC3000 delta AB1.121150.535

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992721
Var 0hN/AN/A
Var 12h I row2-row10.792180.338
Var 12h NI row2-row11.039761
Var 36h I row2-row10.858640.805
Var 36h NI row2-row11.565371
Var 60h I row2-row10.69850.285
Var 60h NI row2-row10.892230.408
Time course 0hI-0hNI0.960050.745
Time course 12hI-12hNI0.734670.033
Time course 36hI-36hNI0.89880.166
Time course 60hI-60hNI1.346770.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.004881