Expression of 1-1-1.4.13.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.003730.919
27DAP/17DAP1.146530.849
39DAP/27DAP0.968980.719
41DAP/39DAP1.09890.504
42DAP/41DAP1.086210.873
43DAP/42DAP1.082960.993
47DAP/43DAP1.081560.429
52DAP/47DAP0.879690.634
57DAP/52DAP1.151370.787

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.987710.562
17DAP/reference1.00350.717
27DAP/reference0.975510.471
39DAP/reference1.024780.377
41DAP/reference1.031720.451
42DAP/reference0.981610.218
43DAP/reference1.018820.73
47DAP/reference1.016890.612
52DAP/reference0.992290.58
57DAP/reference1.080090.063

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.051010.536
27DAP/17DAP0.998221
39DAP/27DAP1.016340.742
41DAP/39DAP1.094430.336
42DAP/41DAP0.988760.845
43DAP/42DAP0.959190.246
47DAP/43DAP0.981550.909
52DAP/47DAP1.008720.991
57DAP/52DAP1.033530.806
57DAP/7DAP0.936881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.204080.115
17DAP/reference1.476810.006
27DAP/reference1.356060.02
39DAP/reference1.707420.007
41DAP/reference1.857050.011
42DAP/reference2.15620.007
43DAP/reference2.271210.007
47DAP/reference1.181780.571
52DAP/reference1.695940.01
57DAP/reference1.646750.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982120.706
17DAP/reference0.947760.17
27DAP/reference0.974510.407
39DAP/reference0.950150.173
41DAP/reference0.926830.205
42DAP/reference1.015760.899
43DAP/reference0.894340.32
47DAP/reference0.994060.59
52DAP/reference0.973960.259
57DAP/reference0.9680.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.109380.224
17DAP/reference1.134150.384
27DAP/reference1.578350.027
39DAP/reference1.49290.012
41DAP/reference1.342760.062
42DAP/reference1.202460.18
43DAP/reference1.221350.259
47DAP/reference0.965030.383
52DAP/reference1.418850.126
57DAP/reference1.143930.867

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.996071
26DAP/20DAP0.997881
34DAP/26DAP1.014941
51DAP/34DAP1.014250.883
52DAP/51DAP0.985451
53DAP/52DAP0.980540.929
55DAP/53DAP0.957180.746
57DAP/55DAP0.975440.875
62DAP/57DAP1.064190.723
68DAP/62DAP1.11440.7
68DAP/14DAP0.998651

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.975660.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.884710.287
Mature Green Tomato/Ripe Tomato0.937010.487
Immature Eggplant/Mature Eggplant0.840420.407
Ripe Pepper/Ripe Tomato1.44497
Mature Eggplant/Ripe Tomato11.0679

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.959370.944
1-1-2/M821.015061
12-2/M820.871460.955
12-4/M820.871321
1-3/M821.009241
2-1-1/M820.986161
2-1/M821.255321
2-6/M820.98921
3-2/M820.81944
4-1-1/M820.953261
4-1/M820.992391
4-3-2/M820.967471
4-3/M820.969741
5-3/M820.999011
6-2/M821.07571
6-3/M821.029911
7-1/M821.024481
7-2/M820.92120.796
9-3-2/M820.886751

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.010891
IL2-6/WTpooled1.302880.659
IL7-5/WTpooled1.83409
IL7-3/WTpooled1.07381
IL12-4/WTpooled0.974961
IL1-4/WTpooled0.988091
WT/WTpooled1.007611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.729650.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.984631
DC3000/delta hrp 6h1.070461
DC3000/delta hrp 12h0.975211
DC3000/delta hrp 24h1.021930.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.101160.057
DC3000 delta B/DC3000 delta AB1.143670.253

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.935111
Exp 36h0.632530.449
Exp 60h0.479610.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987531
Var 0h0.869910.98
Var 12h I row2-row11.233510.204
Var 12h NI row2-row11.031371
Var 36h I row2-row10.995981
Var 36h NI row2-row11.043521
Var 60h I row2-row11.137511
Var 60h NI row2-row11.112381
Time course 0hI-0hNI1.065750.852
Time course 12hI-12hNI1.026580.811
Time course 36hI-36hNI1.044910.453
Time course 60hI-60hNI1.788360.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.719180.314
transgenic ySAMdc/azygous control (breaker)1.611260.248
transgenic ySAMdc/azygous control (red)1.466190.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980520.058

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.031811

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.647210.087
Manapal/WT (break)0.722530.236
Manapal/WT (red)0.857440.274