Expression of 1-1-1.4.13.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00373 | 0.919 |
27DAP/17DAP | 1.14653 | 0.849 |
39DAP/27DAP | 0.96898 | 0.719 |
41DAP/39DAP | 1.0989 | 0.504 |
42DAP/41DAP | 1.08621 | 0.873 |
43DAP/42DAP | 1.08296 | 0.993 |
47DAP/43DAP | 1.08156 | 0.429 |
52DAP/47DAP | 0.87969 | 0.634 |
57DAP/52DAP | 1.15137 | 0.787 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98771 | 0.562 |
17DAP/reference | 1.0035 | 0.717 |
27DAP/reference | 0.97551 | 0.471 |
39DAP/reference | 1.02478 | 0.377 |
41DAP/reference | 1.03172 | 0.451 |
42DAP/reference | 0.98161 | 0.218 |
43DAP/reference | 1.01882 | 0.73 |
47DAP/reference | 1.01689 | 0.612 |
52DAP/reference | 0.99229 | 0.58 |
57DAP/reference | 1.08009 | 0.063 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05101 | 0.536 |
27DAP/17DAP | 0.99822 | 1 |
39DAP/27DAP | 1.01634 | 0.742 |
41DAP/39DAP | 1.09443 | 0.336 |
42DAP/41DAP | 0.98876 | 0.845 |
43DAP/42DAP | 0.95919 | 0.246 |
47DAP/43DAP | 0.98155 | 0.909 |
52DAP/47DAP | 1.00872 | 0.991 |
57DAP/52DAP | 1.03353 | 0.806 |
57DAP/7DAP | 0.93688 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20408 | 0.115 |
17DAP/reference | 1.47681 | 0.006 |
27DAP/reference | 1.35606 | 0.02 |
39DAP/reference | 1.70742 | 0.007 |
41DAP/reference | 1.85705 | 0.011 |
42DAP/reference | 2.1562 | 0.007 |
43DAP/reference | 2.27121 | 0.007 |
47DAP/reference | 1.18178 | 0.571 |
52DAP/reference | 1.69594 | 0.01 |
57DAP/reference | 1.64675 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98212 | 0.706 |
17DAP/reference | 0.94776 | 0.17 |
27DAP/reference | 0.97451 | 0.407 |
39DAP/reference | 0.95015 | 0.173 |
41DAP/reference | 0.92683 | 0.205 |
42DAP/reference | 1.01576 | 0.899 |
43DAP/reference | 0.89434 | 0.32 |
47DAP/reference | 0.99406 | 0.59 |
52DAP/reference | 0.97396 | 0.259 |
57DAP/reference | 0.968 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10938 | 0.224 |
17DAP/reference | 1.13415 | 0.384 |
27DAP/reference | 1.57835 | 0.027 |
39DAP/reference | 1.4929 | 0.012 |
41DAP/reference | 1.34276 | 0.062 |
42DAP/reference | 1.20246 | 0.18 |
43DAP/reference | 1.22135 | 0.259 |
47DAP/reference | 0.96503 | 0.383 |
52DAP/reference | 1.41885 | 0.126 |
57DAP/reference | 1.14393 | 0.867 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99607 | 1 |
26DAP/20DAP | 0.99788 | 1 |
34DAP/26DAP | 1.01494 | 1 |
51DAP/34DAP | 1.01425 | 0.883 |
52DAP/51DAP | 0.98545 | 1 |
53DAP/52DAP | 0.98054 | 0.929 |
55DAP/53DAP | 0.95718 | 0.746 |
57DAP/55DAP | 0.97544 | 0.875 |
62DAP/57DAP | 1.06419 | 0.723 |
68DAP/62DAP | 1.1144 | 0.7 |
68DAP/14DAP | 0.99865 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97566 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.88471 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.93701 | 0.487 |
Immature Eggplant/Mature Eggplant | 0.84042 | 0.407 |
Ripe Pepper/Ripe Tomato | 1.44497 | |
Mature Eggplant/Ripe Tomato | 11.0679 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95937 | 0.944 |
1-1-2/M82 | 1.01506 | 1 |
12-2/M82 | 0.87146 | 0.955 |
12-4/M82 | 0.87132 | 1 |
1-3/M82 | 1.00924 | 1 |
2-1-1/M82 | 0.98616 | 1 |
2-1/M82 | 1.25532 | 1 |
2-6/M82 | 0.9892 | 1 |
3-2/M82 | 0.81944 | |
4-1-1/M82 | 0.95326 | 1 |
4-1/M82 | 0.99239 | 1 |
4-3-2/M82 | 0.96747 | 1 |
4-3/M82 | 0.96974 | 1 |
5-3/M82 | 0.99901 | 1 |
6-2/M82 | 1.0757 | 1 |
6-3/M82 | 1.02991 | 1 |
7-1/M82 | 1.02448 | 1 |
7-2/M82 | 0.9212 | 0.796 |
9-3-2/M82 | 0.88675 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01089 | 1 |
IL2-6/WTpooled | 1.30288 | 0.659 |
IL7-5/WTpooled | 1.83409 | |
IL7-3/WTpooled | 1.0738 | 1 |
IL12-4/WTpooled | 0.97496 | 1 |
IL1-4/WTpooled | 0.98809 | 1 |
WT/WTpooled | 1.00761 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.72965 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98463 | 1 |
DC3000/delta hrp 6h | 1.07046 | 1 |
DC3000/delta hrp 12h | 0.97521 | 1 |
DC3000/delta hrp 24h | 1.02193 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10116 | 0.057 |
DC3000 delta B/DC3000 delta AB | 1.14367 | 0.253 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93511 | 1 |
Exp 36h | 0.63253 | 0.449 |
Exp 60h | 0.47961 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98753 | 1 |
Var 0h | 0.86991 | 0.98 |
Var 12h I row2-row1 | 1.23351 | 0.204 |
Var 12h NI row2-row1 | 1.03137 | 1 |
Var 36h I row2-row1 | 0.99598 | 1 |
Var 36h NI row2-row1 | 1.04352 | 1 |
Var 60h I row2-row1 | 1.13751 | 1 |
Var 60h NI row2-row1 | 1.11238 | 1 |
Time course 0hI-0hNI | 1.06575 | 0.852 |
Time course 12hI-12hNI | 1.02658 | 0.811 |
Time course 36hI-36hNI | 1.04491 | 0.453 |
Time course 60hI-60hNI | 1.78836 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.71918 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.61126 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.46619 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98052 | 0.058 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03181 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.64721 | 0.087 |
Manapal/WT (break) | 0.72253 | 0.236 |
Manapal/WT (red) | 0.85744 | 0.274 |
|
|