Expression of 1-1-1.4.13.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94504 | 0.652 |
27DAP/17DAP | 1.01683 | 0.966 |
39DAP/27DAP | 1.03173 | 0.782 |
41DAP/39DAP | 1.16243 | 0.753 |
42DAP/41DAP | 1.02312 | 0.999 |
43DAP/42DAP | 1.05388 | 1 |
47DAP/43DAP | 1.06053 | 0.943 |
52DAP/47DAP | 1.05886 | 0.875 |
57DAP/52DAP | 0.80177 | 0.74 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90165 | 0.162 |
17DAP/reference | 0.97141 | 0.597 |
27DAP/reference | 1.06238 | 0.239 |
39DAP/reference | 1.15445 | 0.352 |
41DAP/reference | 1.06373 | 0.48 |
42DAP/reference | 0.9934 | 0.531 |
43DAP/reference | 1.00293 | 0.942 |
47DAP/reference | 0.8854 | 0.065 |
52DAP/reference | 0.88166 | 0.167 |
57DAP/reference | 0.98151 | 0.58 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91775 | 0.484 |
27DAP/17DAP | 1.14083 | 0.511 |
39DAP/27DAP | 1.14013 | 0.353 |
41DAP/39DAP | 0.76151 | 0.069 |
42DAP/41DAP | 1.0361 | 1 |
43DAP/42DAP | 1.54884 | 0.015 |
47DAP/43DAP | 1.10761 | 0.95 |
52DAP/47DAP | 0.90002 | 0.314 |
57DAP/52DAP | 0.93095 | 0.28 |
57DAP/7DAP | 1.07228 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06163 | 0.676 |
17DAP/reference | 0.88108 | 0.167 |
27DAP/reference | 0.95839 | 0.348 |
39DAP/reference | 1.07126 | 0.436 |
41DAP/reference | 1.13656 | 0.325 |
42DAP/reference | 0.82779 | 0.09 |
43DAP/reference | 1.05558 | 0.432 |
47DAP/reference | 1.03062 | 0.868 |
52DAP/reference | 0.96416 | 0.435 |
57DAP/reference | 0.97717 | 0.426 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26815 | 0.073 |
17DAP/reference | 1.00576 | 0.873 |
27DAP/reference | 0.98402 | 0.554 |
39DAP/reference | 0.81599 | 0.008 |
41DAP/reference | 0.91989 | 0.173 |
42DAP/reference | 1.02966 | 0.723 |
43DAP/reference | 1.33517 | 0.297 |
47DAP/reference | 1.07869 | 0.311 |
52DAP/reference | 1.01215 | 1 |
57DAP/reference | 0.98182 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07262 | 0.882 |
17DAP/reference | 1.07628 | 0.612 |
27DAP/reference | 0.96977 | 0.465 |
39DAP/reference | 0.9995 | 0.889 |
41DAP/reference | 1.04331 | 0.939 |
42DAP/reference | 1.02968 | 0.716 |
43DAP/reference | 0.94653 | 0.449 |
47DAP/reference | 1.20778 | 0.133 |
52DAP/reference | 0.97572 | 0.69 |
57DAP/reference | 0.93224 | 0.372 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0274 | 1 |
26DAP/20DAP | 0.85168 | 0.244 |
34DAP/26DAP | 1.14215 | 0.819 |
51DAP/34DAP | 1.20593 | 0.126 |
52DAP/51DAP | 1.06706 | 0.939 |
53DAP/52DAP | 1.41239 | 0.064 |
55DAP/53DAP | 1.11956 | 0.689 |
57DAP/55DAP | 0.82947 | 0.225 |
62DAP/57DAP | 0.39589 | 0.002 |
68DAP/62DAP | 1.22866 | 0.7 |
68DAP/14DAP | 0.95692 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13564 | 0.113 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.72361 | 0.132 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.93036 | 1 |
Mature Eggplant/Ripe Tomato | 0.40786 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1535 | 0.591 |
1-1-2/M82 | 0.94072 | |
12-2/M82 | 1.21616 | 0.61 |
12-4/M82 | 1.25889 | 1 |
1-3/M82 | 0.65299 | |
2-1-1/M82 | 1.00836 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09516 | 0.505 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.07968 | |
4-1/M82 | 1.51705 | |
4-3-2/M82 | 1.13421 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.99634 | 1 |
6-2/M82 | 0.68964 | |
6-3/M82 | 0.93662 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.92707 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.4689 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.83578 | 0.31 |
IL12-4/WTpooled | 1.01215 | 1 |
IL1-4/WTpooled | 1.28757 | |
WT/WTpooled | 1.02126 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91015 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0695 | 0.921 |
DC3000/delta hrp 6h | 1.02424 | 0.95 |
DC3000/delta hrp 12h | 1.08909 | 1 |
DC3000/delta hrp 24h | 1.27595 | 0.082 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17858 | 0.063 |
DC3000 delta B/DC3000 delta AB | 1.0526 | 0.625 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.05338 | 1 |
Exp 60h | 1.25975 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04266 | 1 |
Var 0h | 1.04071 | 1 |
Var 12h I row2-row1 | 1.06163 | 0.406 |
Var 12h NI row2-row1 | 0.97062 | 0.906 |
Var 36h I row2-row1 | 1.08192 | 1 |
Var 36h NI row2-row1 | 0.86687 | 0.645 |
Var 60h I row2-row1 | 0.78684 | 0.287 |
Var 60h NI row2-row1 | 0.9429 | 1 |
Time course 0hI-0hNI | 1.04054 | 0.799 |
Time course 12hI-12hNI | 1.07517 | 0.197 |
Time course 36hI-36hNI | 1.10075 | 0.248 |
Time course 60hI-60hNI | 1.55302 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99394 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.68127 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.4431 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97841 | 0.231 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99185 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.09881 | 0.083 |
Manapal/WT (break) | 1.51763 | 0.381 |
Manapal/WT (red) | 1.33991 | 0.413 |
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