Expression of 1-1-1.4.14.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.581280.893
27DAP/17DAP1.265310.833
39DAP/27DAP7.766350.027
41DAP/39DAP1.201760.772
42DAP/41DAP0.983381
43DAP/42DAP1.783980.867
47DAP/43DAP0.528850.05
52DAP/47DAP0.619030.147
57DAP/52DAP0.971630.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.704770.037
17DAP/reference1.036470.717
27DAP/reference0.905570.385
39DAP/reference1.11120.664
41DAP/reference1.003731
42DAP/reference2.382770.001
43DAP/reference1.612630.013
47DAP/reference1.436330.03
52DAP/reference0.972380.489
57DAP/reference1.247470.392

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.311120.032
27DAP/17DAP1.585070.029
39DAP/27DAP3.44080.035
41DAP/39DAP2.170190.304
42DAP/41DAP0.859480.276
43DAP/42DAP1.263080.324
47DAP/43DAP1.287840.18
52DAP/47DAP0.593140.064
57DAP/52DAP1.115430.871
57DAP/7DAP1.786521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.470590.033
17DAP/reference0.951230.338
27DAP/reference1.881570.006
39DAP/reference1.275040.073
41DAP/reference1.442610.126
42DAP/reference2.453460.007
43DAP/reference2.635820.007
47DAP/reference2.893720.014
52DAP/reference2.773290.007
57DAP/reference1.316610.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.507270.269
17DAP/reference1.159270.338
27DAP/reference1.728880.017
39DAP/reference1.17460.62
41DAP/reference0.920.277
42DAP/reference1.875390.007
43DAP/reference1.813320.122
47DAP/reference1.925550.009
52DAP/reference0.865310.078
57DAP/reference1.557160.244

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.694850.015
17DAP/reference0.913440.433
27DAP/reference1.136280.26
39DAP/reference1.843410.005
41DAP/reference1.439220.01
42DAP/reference2.722550.007
43DAP/reference2.713420.006
47DAP/reference1.518240.035
52DAP/reference1.526530.087
57DAP/reference0.932720.416

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.03922
26DAP/20DAP1.224060.285
34DAP/26DAP1.126681
51DAP/34DAP0.997260.873
52DAP/51DAP1.131570.565
53DAP/52DAP1.129790.623
55DAP/53DAP1.276110.696
57DAP/55DAP1.002540.904
62DAP/57DAP1.101970.622
68DAP/62DAP1.106420.885
68DAP/14DAP0.899711

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker33.86840.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.546040.019
Immature Eggplant/Mature Eggplant50.8210.05
Ripe Pepper/Ripe Tomato0.128230.224
Mature Eggplant/Ripe Tomato0.283331

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.363520.574
1-1-2/M821.812161
12-2/M821.009091
12-4/M821.923481
1-3/M821.867680.479
2-1-1/M821.098010.689
2-1/M821.042381
2-6/M821.614390.452
3-2/M821.0380.967
4-1-1/M822.593411
4-1/M826.409720.853
4-3-2/M823.35620.262
4-3/M821.694931
5-3/M820.905951
6-2/M821.927941
6-3/M821.072821
7-1/M821.006431
7-2/M821.124331
9-3-2/M823.520310.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.210410.277
IL2-6/WTpooled1.0720.456
IL7-5/WTpooled0.671260.559
IL7-3/WTpooled0.67078
IL12-4/WTpooled1.209270.891
IL1-4/WTpooled0.951571
WT/WTpooled1.094171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.034760.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.144770.715
DC3000/delta hrp 6h1.756861
DC3000/delta hrp 12h0.959421
DC3000/delta hrp 24h2.452450.027

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.758710.034
DC3000 delta B/DC3000 delta AB3.758010.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.627651
Exp 36h2.179140.489
Exp 60h2.519090.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996291
Var 0h0.916220.933
Var 12h I row2-row11.312740.189
Var 12h NI row2-row11.89980.34
Var 36h I row2-row11.490170.298
Var 36h NI row2-row10.858460.706
Var 60h I row2-row11.028771
Var 60h NI row2-row10.626490.292
Time course 0hI-0hNI1.1760.451
Time course 12hI-12hNI2.712770.005
Time course 36hI-36hNI6.965930.004
Time course 60hI-60hNI21.65850.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.693160.229
transgenic ySAMdc/azygous control (breaker)0.740790.173
transgenic ySAMdc/azygous control (red)1.317150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.863920.052

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.739330.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.797531
Manapal/WT (break)0.560330.229
Manapal/WT (red)0.964410.728