Expression of 1-1-1.4.14.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.58128 | 0.893 |
27DAP/17DAP | 1.26531 | 0.833 |
39DAP/27DAP | 7.76635 | 0.027 |
41DAP/39DAP | 1.20176 | 0.772 |
42DAP/41DAP | 0.98338 | 1 |
43DAP/42DAP | 1.78398 | 0.867 |
47DAP/43DAP | 0.52885 | 0.05 |
52DAP/47DAP | 0.61903 | 0.147 |
57DAP/52DAP | 0.97163 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.70477 | 0.037 |
17DAP/reference | 1.03647 | 0.717 |
27DAP/reference | 0.90557 | 0.385 |
39DAP/reference | 1.1112 | 0.664 |
41DAP/reference | 1.00373 | 1 |
42DAP/reference | 2.38277 | 0.001 |
43DAP/reference | 1.61263 | 0.013 |
47DAP/reference | 1.43633 | 0.03 |
52DAP/reference | 0.97238 | 0.489 |
57DAP/reference | 1.24747 | 0.392 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.31112 | 0.032 |
27DAP/17DAP | 1.58507 | 0.029 |
39DAP/27DAP | 3.4408 | 0.035 |
41DAP/39DAP | 2.17019 | 0.304 |
42DAP/41DAP | 0.85948 | 0.276 |
43DAP/42DAP | 1.26308 | 0.324 |
47DAP/43DAP | 1.28784 | 0.18 |
52DAP/47DAP | 0.59314 | 0.064 |
57DAP/52DAP | 1.11543 | 0.871 |
57DAP/7DAP | 1.78652 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47059 | 0.033 |
17DAP/reference | 0.95123 | 0.338 |
27DAP/reference | 1.88157 | 0.006 |
39DAP/reference | 1.27504 | 0.073 |
41DAP/reference | 1.44261 | 0.126 |
42DAP/reference | 2.45346 | 0.007 |
43DAP/reference | 2.63582 | 0.007 |
47DAP/reference | 2.89372 | 0.014 |
52DAP/reference | 2.77329 | 0.007 |
57DAP/reference | 1.31661 | 0.214 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50727 | 0.269 |
17DAP/reference | 1.15927 | 0.338 |
27DAP/reference | 1.72888 | 0.017 |
39DAP/reference | 1.1746 | 0.62 |
41DAP/reference | 0.92 | 0.277 |
42DAP/reference | 1.87539 | 0.007 |
43DAP/reference | 1.81332 | 0.122 |
47DAP/reference | 1.92555 | 0.009 |
52DAP/reference | 0.86531 | 0.078 |
57DAP/reference | 1.55716 | 0.244 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.69485 | 0.015 |
17DAP/reference | 0.91344 | 0.433 |
27DAP/reference | 1.13628 | 0.26 |
39DAP/reference | 1.84341 | 0.005 |
41DAP/reference | 1.43922 | 0.01 |
42DAP/reference | 2.72255 | 0.007 |
43DAP/reference | 2.71342 | 0.006 |
47DAP/reference | 1.51824 | 0.035 |
52DAP/reference | 1.52653 | 0.087 |
57DAP/reference | 0.93272 | 0.416 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.03922 | |
26DAP/20DAP | 1.22406 | 0.285 |
34DAP/26DAP | 1.12668 | 1 |
51DAP/34DAP | 0.99726 | 0.873 |
52DAP/51DAP | 1.13157 | 0.565 |
53DAP/52DAP | 1.12979 | 0.623 |
55DAP/53DAP | 1.27611 | 0.696 |
57DAP/55DAP | 1.00254 | 0.904 |
62DAP/57DAP | 1.10197 | 0.622 |
68DAP/62DAP | 1.10642 | 0.885 |
68DAP/14DAP | 0.89971 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 33.8684 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.54604 | 0.019 |
Immature Eggplant/Mature Eggplant | 50.821 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.12823 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.28333 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.36352 | 0.574 |
1-1-2/M82 | 1.81216 | 1 |
12-2/M82 | 1.00909 | 1 |
12-4/M82 | 1.92348 | 1 |
1-3/M82 | 1.86768 | 0.479 |
2-1-1/M82 | 1.09801 | 0.689 |
2-1/M82 | 1.04238 | 1 |
2-6/M82 | 1.61439 | 0.452 |
3-2/M82 | 1.038 | 0.967 |
4-1-1/M82 | 2.59341 | 1 |
4-1/M82 | 6.40972 | 0.853 |
4-3-2/M82 | 3.3562 | 0.262 |
4-3/M82 | 1.69493 | 1 |
5-3/M82 | 0.90595 | 1 |
6-2/M82 | 1.92794 | 1 |
6-3/M82 | 1.07282 | 1 |
7-1/M82 | 1.00643 | 1 |
7-2/M82 | 1.12433 | 1 |
9-3-2/M82 | 3.52031 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.21041 | 0.277 |
IL2-6/WTpooled | 1.072 | 0.456 |
IL7-5/WTpooled | 0.67126 | 0.559 |
IL7-3/WTpooled | 0.67078 | |
IL12-4/WTpooled | 1.20927 | 0.891 |
IL1-4/WTpooled | 0.95157 | 1 |
WT/WTpooled | 1.09417 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.03476 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14477 | 0.715 |
DC3000/delta hrp 6h | 1.75686 | 1 |
DC3000/delta hrp 12h | 0.95942 | 1 |
DC3000/delta hrp 24h | 2.45245 | 0.027 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.75871 | 0.034 |
DC3000 delta B/DC3000 delta AB | 3.75801 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.62765 | 1 |
Exp 36h | 2.17914 | 0.489 |
Exp 60h | 2.51909 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99629 | 1 |
Var 0h | 0.91622 | 0.933 |
Var 12h I row2-row1 | 1.31274 | 0.189 |
Var 12h NI row2-row1 | 1.8998 | 0.34 |
Var 36h I row2-row1 | 1.49017 | 0.298 |
Var 36h NI row2-row1 | 0.85846 | 0.706 |
Var 60h I row2-row1 | 1.02877 | 1 |
Var 60h NI row2-row1 | 0.62649 | 0.292 |
Time course 0hI-0hNI | 1.176 | 0.451 |
Time course 12hI-12hNI | 2.71277 | 0.005 |
Time course 36hI-36hNI | 6.96593 | 0.004 |
Time course 60hI-60hNI | 21.6585 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.69316 | 0.229 |
transgenic ySAMdc/azygous control (breaker) | 0.74079 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.31715 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.86392 | 0.052 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73933 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79753 | 1 |
Manapal/WT (break) | 0.56033 | 0.229 |
Manapal/WT (red) | 0.96441 | 0.728 |
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