Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.4.14.17

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.64555	0.303
27DAP/17DAP	1.55323	0.588
39DAP/27DAP	1.46689	0.191
41DAP/39DAP	0.99822	0.946
42DAP/41DAP	1.08098	0.999
43DAP/42DAP	1.29119	0.772
47DAP/43DAP	1.23617	0.733
52DAP/47DAP	0.97958	0.729
57DAP/52DAP	1.09172	0.977

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	1.04517
27DAP/reference	0.74781
39DAP/reference	1.23203	0.975
41DAP/reference	0.98654
42DAP/reference	N/A	N/A
43DAP/reference	0.49503
47DAP/reference	0.7385
52DAP/reference	0.54594	0.014
57DAP/reference	1.12095

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.56008	0.038
27DAP/17DAP	0.96827	0.943
39DAP/27DAP	0.87422	0.775
41DAP/39DAP	2.80693
42DAP/41DAP	1.05138	0.926
43DAP/42DAP	1.09231	1
47DAP/43DAP	1.14398	0.857
52DAP/47DAP	1.02722	0.962
57DAP/52DAP	1.32774	0.895
57DAP/7DAP	1.04128	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.20219	0.104
17DAP/reference	1.00651	1
27DAP/reference	0.79958	0.01
39DAP/reference	0.62817	0.013
41DAP/reference	0.5898	0.016
42DAP/reference	0.47476	0.01
43DAP/reference	0.52202	0.013
47DAP/reference	0.73237	0.168
52DAP/reference	0.534	0.013
57DAP/reference	0.58273	0.01

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79068	0.441
17DAP/reference	0.93718	0.461
27DAP/reference	0.80492	0.327
39DAP/reference	N/A	N/A
41DAP/reference	1.65051	0.394
42DAP/reference	0.56444	0.135
43DAP/reference	0.83282	0.459
47DAP/reference	N/A	N/A
52DAP/reference	0.71563	0.013
57DAP/reference	1.16683	0.755

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.38805	0.015
17DAP/reference	1.99519	0.088
27DAP/reference	1.5726	0.03
39DAP/reference	1.31731	0.043
41DAP/reference	0.93021	0.293
42DAP/reference	0.79708	0.071
43DAP/reference	0.6934	0.028
47DAP/reference	0.73201	0.011
52DAP/reference	0.84774	0.223
57DAP/reference	1.0623	0.572

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.85253	0.26
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.00478	1
51DAP/34DAP	0.87856
52DAP/51DAP	0.95859
53DAP/52DAP	1.21231	0.688
55DAP/53DAP	1.2301	0.939
57DAP/55DAP	0.55151	0.025
62DAP/57DAP	0.79362	0.994
68DAP/62DAP	1.92391	0.166
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.13284	0.665

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.63946	0.209
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.07679
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	1.15276
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.06992	0.493
IL2-6/WTpooled	0.84151	0.473
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.46852	1
IL12-4/WTpooled	1.02755	1
IL1-4/WTpooled	1.11818	1
WT/WTpooled	0.98163	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	1.06222	0.95
DC3000/delta hrp 12h	1.02436	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.94656	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.90486	1
Manapal/WT (red)	1.12285	0.413