Expression of 1-1-1.4.14.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29427 | 0.452 |
27DAP/17DAP | 1.04794 | 1 |
39DAP/27DAP | 1.1997 | 0.622 |
41DAP/39DAP | 1.07996 | 0.756 |
42DAP/41DAP | 0.77054 | 0.774 |
43DAP/42DAP | 1.02611 | 0.937 |
47DAP/43DAP | 1.07706 | 0.873 |
52DAP/47DAP | 1.12138 | 0.946 |
57DAP/52DAP | 1.37799 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78321 | |
17DAP/reference | 0.68587 | |
27DAP/reference | 0.36268 | 0.01 |
39DAP/reference | N/A | N/A |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.17251 | 0.68 |
43DAP/reference | 0.64801 | |
47DAP/reference | 0.94115 | 0.418 |
52DAP/reference | N/A | N/A |
57DAP/reference | 1.15739 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87864 | 0.158 |
27DAP/17DAP | 0.93674 | 0.821 |
39DAP/27DAP | 1.02811 | 0.758 |
41DAP/39DAP | 0.88932 | 0.599 |
42DAP/41DAP | 1.04408 | 0.947 |
43DAP/42DAP | 1.11966 | 0.324 |
47DAP/43DAP | 1.10775 | 0.54 |
52DAP/47DAP | 1.04353 | 0.835 |
57DAP/52DAP | 0.98969 | 0.818 |
57DAP/7DAP | 1.00348 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96597 | 0.55 |
17DAP/reference | 1.04317 | 0.627 |
27DAP/reference | 1.14843 | 0.107 |
39DAP/reference | 0.98925 | 0.64 |
41DAP/reference | 1.32374 | 0.016 |
42DAP/reference | 1.20566 | 0.132 |
43DAP/reference | 1.2107 | 0.07 |
47DAP/reference | 1.07343 | 0.791 |
52DAP/reference | 1.09821 | 0.526 |
57DAP/reference | 1.11174 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09384 | 0.687 |
17DAP/reference | 1.16035 | 0.166 |
27DAP/reference | 1.20641 | 0.323 |
39DAP/reference | 1.06044 | 1 |
41DAP/reference | 1.48533 | 0.024 |
42DAP/reference | 0.93133 | |
43DAP/reference | 1.00908 | 0.748 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.17409 | 0.03 |
57DAP/reference | 0.95758 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9297 | 0.268 |
17DAP/reference | 0.97492 | 0.658 |
27DAP/reference | 1.28964 | 0.164 |
39DAP/reference | 1.01478 | 0.987 |
41DAP/reference | 0.95822 | 0.618 |
42DAP/reference | 1.13144 | 0.45 |
43DAP/reference | 0.94945 | 0.484 |
47DAP/reference | 1.13011 | 0.405 |
52DAP/reference | 1.20078 | 0.526 |
57DAP/reference | 1.08239 | 0.531 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.66214 | 0.399 |
26DAP/20DAP | 0.97309 | 1 |
34DAP/26DAP | 1.00863 | 1 |
51DAP/34DAP | 1.16373 | 0.339 |
52DAP/51DAP | 1.39753 | 0.137 |
53DAP/52DAP | 0.8766 | 0.379 |
55DAP/53DAP | 1.26054 | 0.287 |
57DAP/55DAP | 0.8734 | 0.448 |
62DAP/57DAP | 1.5588 | 0.081 |
68DAP/62DAP | 1.2173 | 0.936 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90551 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.44792 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02333 | 1 |
IL2-6/WTpooled | 0.9227 | 1 |
IL7-5/WTpooled | 1.26176 | 0.792 |
IL7-3/WTpooled | 1.02199 | 1 |
IL12-4/WTpooled | 0.92371 | 1 |
IL1-4/WTpooled | 0.95703 | 0.699 |
WT/WTpooled | 0.97716 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00193 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93427 | 1 |
DC3000/delta hrp 6h | 1.12868 | 1 |
DC3000/delta hrp 12h | 1.38681 | 1 |
DC3000/delta hrp 24h | 0.91689 | 0.554 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.72234 | 0.031 |
DC3000 delta B/DC3000 delta AB | 0.71446 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00993 | 1 |
Var 0h | 0.4838 | 0.933 |
Var 12h I row2-row1 | 0.84021 | 0.565 |
Var 12h NI row2-row1 | 0.90162 | 0.36 |
Var 36h I row2-row1 | 1.03656 | 1 |
Var 36h NI row2-row1 | 0.8567 | 0.706 |
Var 60h I row2-row1 | 0.96971 | 0.952 |
Var 60h NI row2-row1 | 0.99876 | 1 |
Time course 0hI-0hNI | 0.99246 | 1 |
Time course 12hI-12hNI | 1.04983 | 0.82 |
Time course 36hI-36hNI | 1.04418 | 0.799 |
Time course 60hI-60hNI | 0.71195 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.64152 | 0.183 |
Manapal/WT (red) | N/A | N/A |
|
|