Expression of 1-1-1.4.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.294270.452
27DAP/17DAP1.047941
39DAP/27DAP1.19970.622
41DAP/39DAP1.079960.756
42DAP/41DAP0.770540.774
43DAP/42DAP1.026110.937
47DAP/43DAP1.077060.873
52DAP/47DAP1.121380.946
57DAP/52DAP1.377990.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.78321
17DAP/reference0.68587
27DAP/reference0.362680.01
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/reference1.172510.68
43DAP/reference0.64801
47DAP/reference0.941150.418
52DAP/referenceN/AN/A
57DAP/reference1.15739

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.878640.158
27DAP/17DAP0.936740.821
39DAP/27DAP1.028110.758
41DAP/39DAP0.889320.599
42DAP/41DAP1.044080.947
43DAP/42DAP1.119660.324
47DAP/43DAP1.107750.54
52DAP/47DAP1.043530.835
57DAP/52DAP0.989690.818
57DAP/7DAP1.003481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965970.55
17DAP/reference1.043170.627
27DAP/reference1.148430.107
39DAP/reference0.989250.64
41DAP/reference1.323740.016
42DAP/reference1.205660.132
43DAP/reference1.21070.07
47DAP/reference1.073430.791
52DAP/reference1.098210.526
57DAP/reference1.111740.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.093840.687
17DAP/reference1.160350.166
27DAP/reference1.206410.323
39DAP/reference1.060441
41DAP/reference1.485330.024
42DAP/reference0.93133
43DAP/reference1.009080.748
47DAP/referenceN/AN/A
52DAP/reference1.174090.03
57DAP/reference0.957580.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92970.268
17DAP/reference0.974920.658
27DAP/reference1.289640.164
39DAP/reference1.014780.987
41DAP/reference0.958220.618
42DAP/reference1.131440.45
43DAP/reference0.949450.484
47DAP/reference1.130110.405
52DAP/reference1.200780.526
57DAP/reference1.082390.531

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.662140.399
26DAP/20DAP0.973091
34DAP/26DAP1.008631
51DAP/34DAP1.163730.339
52DAP/51DAP1.397530.137
53DAP/52DAP0.87660.379
55DAP/53DAP1.260540.287
57DAP/55DAP0.87340.448
62DAP/57DAP1.55880.081
68DAP/62DAP1.21730.936
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.905510.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.44792

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.023331
IL2-6/WTpooled0.92271
IL7-5/WTpooled1.261760.792
IL7-3/WTpooled1.021991
IL12-4/WTpooled0.923711
IL1-4/WTpooled0.957030.699
WT/WTpooled0.977161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.001931

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.934271
DC3000/delta hrp 6h1.128681
DC3000/delta hrp 12h1.386811
DC3000/delta hrp 24h0.916890.554

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.722340.031
DC3000 delta B/DC3000 delta AB0.714460.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009931
Var 0h0.48380.933
Var 12h I row2-row10.840210.565
Var 12h NI row2-row10.901620.36
Var 36h I row2-row11.036561
Var 36h NI row2-row10.85670.706
Var 60h I row2-row10.969710.952
Var 60h NI row2-row10.998761
Time course 0hI-0hNI0.992461
Time course 12hI-12hNI1.049830.82
Time course 36hI-36hNI1.044180.799
Time course 60hI-60hNI0.711950.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.641520.183
Manapal/WT (red)N/AN/A