Expression of 1-1-1.4.15.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.745890.083
27DAP/17DAP1.13760.873
39DAP/27DAP0.971710.7
41DAP/39DAP1.672390.56
42DAP/41DAP1.220790.773
43DAP/42DAP0.88860.744
47DAP/43DAP1.0860.909
52DAP/47DAP1.135470.828
57DAP/52DAP0.929970.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.867040.118
17DAP/reference0.804720.009
27DAP/reference0.925440.057
39DAP/reference0.888640.013
41DAP/reference0.810340.01
42DAP/reference0.89150.022
43DAP/reference0.923410.058
47DAP/reference0.961730.322
52DAP/reference1.144120.242
57DAP/reference1.115030.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.873540.388
27DAP/17DAP0.958520.854
39DAP/27DAP1.069910.615
41DAP/39DAP0.889890.481
42DAP/41DAP1.091460.651
43DAP/42DAP1.081120.413
47DAP/43DAP1.026240.951
52DAP/47DAP0.948640.824
57DAP/52DAP0.775840.321
57DAP/7DAP0.657091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882750.122
17DAP/reference0.927380.124
27DAP/reference0.879940.01
39DAP/reference0.923240.021
41DAP/reference0.882820.02
42DAP/reference0.883630.048
43DAP/reference0.899080.034
47DAP/reference0.879630.168
52DAP/reference0.81230.021
57DAP/reference0.842630.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879370.134
17DAP/reference0.777570.005
27DAP/reference0.847470.038
39DAP/reference0.904910.11
41DAP/reference0.916960.127
42DAP/reference0.925050.024
43DAP/reference0.872460.166
47DAP/reference0.851680.015
52DAP/reference0.789360.006
57DAP/reference0.769330.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.912620.065
17DAP/reference0.91580.129
27DAP/reference0.890880.045
39DAP/reference0.886710.013
41DAP/reference0.874530.04
42DAP/reference1.032141
43DAP/reference0.979220.59
47DAP/reference0.972020.409
52DAP/reference0.833250.089
57DAP/reference1.363510.09

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.035240.966
26DAP/20DAP0.900951
34DAP/26DAP0.923050.826
51DAP/34DAP1.001960.937
52DAP/51DAP1.129530.454
53DAP/52DAP0.966170.854
55DAP/53DAP1.120690.562
57DAP/55DAP0.866520.327
62DAP/57DAP1.183790.158
68DAP/62DAP1.085410.89
68DAP/14DAP1.266990.067

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.838830.145

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.301210.299
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.36721
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.936360.944
1-1-2/M820.821581
12-2/M821.110561
12-4/M821.02081
1-3/M820.822170.378
2-1-1/M821.062430.764
2-1/M82N/AN/A
2-6/M821.031340.695
3-2/M82N/AN/A
4-1-1/M820.952321
4-1/M820.87899
4-3-2/M821.16901
4-3/M820.90612
5-3/M820.97481
6-2/M820.971731
6-3/M821.064311
7-1/M820.88608
7-2/M821.073681
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.085280.365
IL2-6/WTpooled1.099340.788
IL7-5/WTpooled0.892271
IL7-3/WTpooled1.029491
IL12-4/WTpooled1.183860.695
IL1-4/WTpooled0.94330.834
WT/WTpooled0.894631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.843760.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.04330.921
DC3000/delta hrp 6h0.894860.95
DC3000/delta hrp 12h1.132151
DC3000/delta hrp 24h2.204890.027

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.234520.042
DC3000 delta B/DC3000 delta AB1.967660.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.944281
Exp 36h0.961120.943
Exp 60h1.098181

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.925941
Var 0h1.349330.98
Var 12h I row2-row12.082360.473
Var 12h NI row2-row10.883940.627
Var 36h I row2-row10.96921
Var 36h NI row2-row10.662681
Var 60h I row2-row11.311690.562
Var 60h NI row2-row11.143490.904
Time course 0hI-0hNI1.081870.852
Time course 12hI-12hNI0.944110.628
Time course 36hI-36hNI0.909760.084
Time course 60hI-60hNI0.972510.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967580.662
transgenic ySAMdc/azygous control (breaker)1.15130.166
transgenic ySAMdc/azygous control (red)0.937631

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030580.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.958310.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.830261
Manapal/WT (break)0.946960.333
Manapal/WT (red)1.150041