Expression of 1-1-1.4.15.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74589 | 0.083 |
27DAP/17DAP | 1.1376 | 0.873 |
39DAP/27DAP | 0.97171 | 0.7 |
41DAP/39DAP | 1.67239 | 0.56 |
42DAP/41DAP | 1.22079 | 0.773 |
43DAP/42DAP | 0.8886 | 0.744 |
47DAP/43DAP | 1.086 | 0.909 |
52DAP/47DAP | 1.13547 | 0.828 |
57DAP/52DAP | 0.92997 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86704 | 0.118 |
17DAP/reference | 0.80472 | 0.009 |
27DAP/reference | 0.92544 | 0.057 |
39DAP/reference | 0.88864 | 0.013 |
41DAP/reference | 0.81034 | 0.01 |
42DAP/reference | 0.8915 | 0.022 |
43DAP/reference | 0.92341 | 0.058 |
47DAP/reference | 0.96173 | 0.322 |
52DAP/reference | 1.14412 | 0.242 |
57DAP/reference | 1.11503 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87354 | 0.388 |
27DAP/17DAP | 0.95852 | 0.854 |
39DAP/27DAP | 1.06991 | 0.615 |
41DAP/39DAP | 0.88989 | 0.481 |
42DAP/41DAP | 1.09146 | 0.651 |
43DAP/42DAP | 1.08112 | 0.413 |
47DAP/43DAP | 1.02624 | 0.951 |
52DAP/47DAP | 0.94864 | 0.824 |
57DAP/52DAP | 0.77584 | 0.321 |
57DAP/7DAP | 0.65709 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88275 | 0.122 |
17DAP/reference | 0.92738 | 0.124 |
27DAP/reference | 0.87994 | 0.01 |
39DAP/reference | 0.92324 | 0.021 |
41DAP/reference | 0.88282 | 0.02 |
42DAP/reference | 0.88363 | 0.048 |
43DAP/reference | 0.89908 | 0.034 |
47DAP/reference | 0.87963 | 0.168 |
52DAP/reference | 0.8123 | 0.021 |
57DAP/reference | 0.84263 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87937 | 0.134 |
17DAP/reference | 0.77757 | 0.005 |
27DAP/reference | 0.84747 | 0.038 |
39DAP/reference | 0.90491 | 0.11 |
41DAP/reference | 0.91696 | 0.127 |
42DAP/reference | 0.92505 | 0.024 |
43DAP/reference | 0.87246 | 0.166 |
47DAP/reference | 0.85168 | 0.015 |
52DAP/reference | 0.78936 | 0.006 |
57DAP/reference | 0.76933 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91262 | 0.065 |
17DAP/reference | 0.9158 | 0.129 |
27DAP/reference | 0.89088 | 0.045 |
39DAP/reference | 0.88671 | 0.013 |
41DAP/reference | 0.87453 | 0.04 |
42DAP/reference | 1.03214 | 1 |
43DAP/reference | 0.97922 | 0.59 |
47DAP/reference | 0.97202 | 0.409 |
52DAP/reference | 0.83325 | 0.089 |
57DAP/reference | 1.36351 | 0.09 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03524 | 0.966 |
26DAP/20DAP | 0.90095 | 1 |
34DAP/26DAP | 0.92305 | 0.826 |
51DAP/34DAP | 1.00196 | 0.937 |
52DAP/51DAP | 1.12953 | 0.454 |
53DAP/52DAP | 0.96617 | 0.854 |
55DAP/53DAP | 1.12069 | 0.562 |
57DAP/55DAP | 0.86652 | 0.327 |
62DAP/57DAP | 1.18379 | 0.158 |
68DAP/62DAP | 1.08541 | 0.89 |
68DAP/14DAP | 1.26699 | 0.067 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83883 | 0.145 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.30121 | 0.299 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.36721 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93636 | 0.944 |
1-1-2/M82 | 0.82158 | 1 |
12-2/M82 | 1.11056 | 1 |
12-4/M82 | 1.0208 | 1 |
1-3/M82 | 0.82217 | 0.378 |
2-1-1/M82 | 1.06243 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.03134 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.95232 | 1 |
4-1/M82 | 0.87899 | |
4-3-2/M82 | 1.16901 | |
4-3/M82 | 0.90612 | |
5-3/M82 | 0.9748 | 1 |
6-2/M82 | 0.97173 | 1 |
6-3/M82 | 1.06431 | 1 |
7-1/M82 | 0.88608 | |
7-2/M82 | 1.07368 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.08528 | 0.365 |
IL2-6/WTpooled | 1.09934 | 0.788 |
IL7-5/WTpooled | 0.89227 | 1 |
IL7-3/WTpooled | 1.02949 | 1 |
IL12-4/WTpooled | 1.18386 | 0.695 |
IL1-4/WTpooled | 0.9433 | 0.834 |
WT/WTpooled | 0.89463 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84376 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0433 | 0.921 |
DC3000/delta hrp 6h | 0.89486 | 0.95 |
DC3000/delta hrp 12h | 1.13215 | 1 |
DC3000/delta hrp 24h | 2.20489 | 0.027 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.23452 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.96766 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94428 | 1 |
Exp 36h | 0.96112 | 0.943 |
Exp 60h | 1.09818 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92594 | 1 |
Var 0h | 1.34933 | 0.98 |
Var 12h I row2-row1 | 2.08236 | 0.473 |
Var 12h NI row2-row1 | 0.88394 | 0.627 |
Var 36h I row2-row1 | 0.9692 | 1 |
Var 36h NI row2-row1 | 0.66268 | 1 |
Var 60h I row2-row1 | 1.31169 | 0.562 |
Var 60h NI row2-row1 | 1.14349 | 0.904 |
Time course 0hI-0hNI | 1.08187 | 0.852 |
Time course 12hI-12hNI | 0.94411 | 0.628 |
Time course 36hI-36hNI | 0.90976 | 0.084 |
Time course 60hI-60hNI | 0.97251 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96758 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.1513 | 0.166 |
transgenic ySAMdc/azygous control (red) | 0.93763 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03058 | 0.155 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95831 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83026 | 1 |
Manapal/WT (break) | 0.94696 | 0.333 |
Manapal/WT (red) | 1.15004 | 1 |
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