Expression of 1-1-1.4.15.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.824 | 0.413 |
27DAP/17DAP | 1.05185 | 1 |
39DAP/27DAP | 0.87373 | 0.663 |
41DAP/39DAP | 1.18831 | 0.349 |
42DAP/41DAP | 0.94911 | 1 |
43DAP/42DAP | 1.26292 | 0.475 |
47DAP/43DAP | 1.37434 | 0.193 |
52DAP/47DAP | 0.9356 | 0.761 |
57DAP/52DAP | 1.1662 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12197 | 0.11 |
17DAP/reference | 1.1827 | 0.011 |
27DAP/reference | 1.14142 | 0.028 |
39DAP/reference | 1.07233 | 0.335 |
41DAP/reference | 1.18091 | 0.014 |
42DAP/reference | 0.87765 | 0.011 |
43DAP/reference | 1.01294 | 0.982 |
47DAP/reference | 0.94533 | 0.071 |
52DAP/reference | 0.86987 | 0.053 |
57DAP/reference | 0.91853 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98302 | 0.75 |
27DAP/17DAP | 1.04042 | 0.942 |
39DAP/27DAP | 1.11088 | 0.587 |
41DAP/39DAP | 0.9295 | 0.923 |
42DAP/41DAP | 1.04318 | 0.879 |
43DAP/42DAP | 1.11694 | 0.297 |
47DAP/43DAP | 0.97231 | 0.87 |
52DAP/47DAP | 1.10213 | 0.689 |
57DAP/52DAP | 1.01072 | 0.902 |
57DAP/7DAP | 1.01827 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9545 | 0.495 |
17DAP/reference | 1.05151 | 0.971 |
27DAP/reference | 0.91624 | 0.171 |
39DAP/reference | 0.81645 | 0.083 |
41DAP/reference | 0.87363 | 0.153 |
42DAP/reference | 0.90821 | 0.289 |
43DAP/reference | 0.89296 | 0.132 |
47DAP/reference | 0.76618 | 0.066 |
52DAP/reference | 0.83981 | 0.072 |
57DAP/reference | 0.81032 | 0.064 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.039 | 0.679 |
17DAP/reference | 1.06524 | 0.143 |
27DAP/reference | 1.03374 | 0.988 |
39DAP/reference | 0.9782 | 0.455 |
41DAP/reference | 0.99788 | 0.631 |
42DAP/reference | 0.90824 | 0.108 |
43DAP/reference | 0.96047 | 0.45 |
47DAP/reference | 0.96612 | 0.246 |
52DAP/reference | 0.98549 | 0.5 |
57DAP/reference | 1.00713 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94413 | 0.362 |
17DAP/reference | 1.03816 | 1 |
27DAP/reference | 0.91204 | 0.376 |
39DAP/reference | 0.78877 | 0.054 |
41DAP/reference | 0.84699 | 0.064 |
42DAP/reference | 0.85231 | 0.071 |
43DAP/reference | 0.7651 | 0.043 |
47DAP/reference | 0.86376 | 0.109 |
52DAP/reference | 0.83722 | 0.167 |
57DAP/reference | 0.78896 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07367 | 0.966 |
26DAP/20DAP | 0.9334 | 1 |
34DAP/26DAP | 1.16137 | 0.819 |
51DAP/34DAP | 1.06327 | 0.949 |
52DAP/51DAP | 1.56423 | 0.057 |
53DAP/52DAP | 0.98069 | 0.891 |
55DAP/53DAP | 1.17109 | 0.477 |
57DAP/55DAP | 1.03387 | 1 |
62DAP/57DAP | 1.03566 | 0.935 |
68DAP/62DAP | 0.72196 | 0.087 |
68DAP/14DAP | 0.61177 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77165 | 0.129 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.05449 | 0.063 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.45521 | 0.082 |
Ripe Pepper/Ripe Tomato | 1.61319 | |
Mature Eggplant/Ripe Tomato | 5.41937 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.44965 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01903 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.90961 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.04295 | 0.695 |
IL1-4/WTpooled | 1.14736 | 1 |
WT/WTpooled | 1.31286 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.73765 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.18496 | 0.914 |
DC3000/delta hrp 6h | 1.0366 | 1 |
DC3000/delta hrp 12h | 1.01034 | 1 |
DC3000/delta hrp 24h | 1.08242 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07991 | |
DC3000 delta B/DC3000 delta AB | 0.98952 | 0.873 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02758 | 1 |
Exp 36h | 0.75601 | 0.504 |
Exp 60h | 0.59441 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05324 | 1 |
Var 0h | 1.00602 | 1 |
Var 12h I row2-row1 | 1.08928 | 0.324 |
Var 12h NI row2-row1 | 0.95536 | 0.906 |
Var 36h I row2-row1 | 0.90123 | 1 |
Var 36h NI row2-row1 | 1.00626 | 1 |
Var 60h I row2-row1 | 1.27022 | 0.562 |
Var 60h NI row2-row1 | 1.14315 | 0.904 |
Time course 0hI-0hNI | 1.03831 | 0.852 |
Time course 12hI-12hNI | 0.98429 | 0.87 |
Time course 36hI-36hNI | 1.08138 | 0.975 |
Time course 60hI-60hNI | 0.80859 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88933 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.31643 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.003 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93484 | 0.066 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.22408 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95757 | 1 |
Manapal/WT (break) | 1.35262 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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