Expression of 1-1-1.4.15.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.8240.413
27DAP/17DAP1.051851
39DAP/27DAP0.873730.663
41DAP/39DAP1.188310.349
42DAP/41DAP0.949111
43DAP/42DAP1.262920.475
47DAP/43DAP1.374340.193
52DAP/47DAP0.93560.761
57DAP/52DAP1.16620.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.121970.11
17DAP/reference1.18270.011
27DAP/reference1.141420.028
39DAP/reference1.072330.335
41DAP/reference1.180910.014
42DAP/reference0.877650.011
43DAP/reference1.012940.982
47DAP/reference0.945330.071
52DAP/reference0.869870.053
57DAP/reference0.918530.156

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983020.75
27DAP/17DAP1.040420.942
39DAP/27DAP1.110880.587
41DAP/39DAP0.92950.923
42DAP/41DAP1.043180.879
43DAP/42DAP1.116940.297
47DAP/43DAP0.972310.87
52DAP/47DAP1.102130.689
57DAP/52DAP1.010720.902
57DAP/7DAP1.018271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.95450.495
17DAP/reference1.051510.971
27DAP/reference0.916240.171
39DAP/reference0.816450.083
41DAP/reference0.873630.153
42DAP/reference0.908210.289
43DAP/reference0.892960.132
47DAP/reference0.766180.066
52DAP/reference0.839810.072
57DAP/reference0.810320.064

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0390.679
17DAP/reference1.065240.143
27DAP/reference1.033740.988
39DAP/reference0.97820.455
41DAP/reference0.997880.631
42DAP/reference0.908240.108
43DAP/reference0.960470.45
47DAP/reference0.966120.246
52DAP/reference0.985490.5
57DAP/reference1.007131

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944130.362
17DAP/reference1.038161
27DAP/reference0.912040.376
39DAP/reference0.788770.054
41DAP/reference0.846990.064
42DAP/reference0.852310.071
43DAP/reference0.76510.043
47DAP/reference0.863760.109
52DAP/reference0.837220.167
57DAP/reference0.788960.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.073670.966
26DAP/20DAP0.93341
34DAP/26DAP1.161370.819
51DAP/34DAP1.063270.949
52DAP/51DAP1.564230.057
53DAP/52DAP0.980690.891
55DAP/53DAP1.171090.477
57DAP/55DAP1.033871
62DAP/57DAP1.035660.935
68DAP/62DAP0.721960.087
68DAP/14DAP0.611770.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.771650.129

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.054490.063
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.455210.082
Ripe Pepper/Ripe Tomato1.61319
Mature Eggplant/Ripe Tomato5.41937

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.44965
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.019031
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.90961
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.042950.695
IL1-4/WTpooled1.147361
WT/WTpooled1.31286

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.737650.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.184960.914
DC3000/delta hrp 6h1.03661
DC3000/delta hrp 12h1.010341
DC3000/delta hrp 24h1.082421

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.07991
DC3000 delta B/DC3000 delta AB0.989520.873

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.027581
Exp 36h0.756010.504
Exp 60h0.594410.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.053241
Var 0h1.006021
Var 12h I row2-row11.089280.324
Var 12h NI row2-row10.955360.906
Var 36h I row2-row10.901231
Var 36h NI row2-row11.006261
Var 60h I row2-row11.270220.562
Var 60h NI row2-row11.143150.904
Time course 0hI-0hNI1.038310.852
Time course 12hI-12hNI0.984290.87
Time course 36hI-36hNI1.081380.975
Time course 60hI-60hNI0.808590.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.889330.324
transgenic ySAMdc/azygous control (breaker)1.316430.248
transgenic ySAMdc/azygous control (red)1.0031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.934840.066

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.224080.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.957571
Manapal/WT (break)1.352620.381
Manapal/WT (red)N/AN/A