Expression of 1-1-1.4.15.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.885980.427
27DAP/17DAP0.893550.754
39DAP/27DAP1.620190.229
41DAP/39DAP1.181230.822
42DAP/41DAP1.079670.898
43DAP/42DAP0.852190.606
47DAP/43DAP1.273890.442
52DAP/47DAP1.273830.657
57DAP/52DAP0.975210.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.034450.76
17DAP/reference1.019650.585
27DAP/reference0.920510.249
39DAP/reference0.955790.333
41DAP/reference1.090190.079
42DAP/reference0.968360.225
43DAP/reference1.080270.111
47DAP/reference0.9710.345
52DAP/reference1.01171
57DAP/reference0.871850.047

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.859590.311
27DAP/17DAP1.156890.621
39DAP/27DAP1.080270.643
41DAP/39DAP1.000711
42DAP/41DAP1.240950.415
43DAP/42DAP1.231920.017
47DAP/43DAP1.080010.758
52DAP/47DAP0.953290.801
57DAP/52DAP0.944020.651
57DAP/7DAP0.717521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.180050.274
17DAP/reference1.091350.754
27DAP/reference0.880180.076
39DAP/reference0.910630.049
41DAP/reference1.066850.767
42DAP/reference0.974180.506
43DAP/reference1.073240.307
47DAP/reference1.013351
52DAP/reference1.001250.74
57DAP/reference1.130450.147

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.209790.124
17DAP/reference1.070770.723
27DAP/reference0.959040.381
39DAP/reference0.979080.497
41DAP/reference0.911220.108
42DAP/reference0.803560.022
43DAP/reference0.933450.361
47DAP/reference0.859470.021
52DAP/reference1.048690.559
57DAP/reference1.235970.172

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.135470.212
17DAP/reference1.034210.784
27DAP/reference1.09670.575
39DAP/reference0.947740.393
41DAP/reference0.842620.167
42DAP/reference0.889750.22
43DAP/reference0.779660.084
47DAP/reference0.946660.348
52DAP/reference0.867320.262
57DAP/reference0.794360.07

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.161110.966
26DAP/20DAP1.058260.865
34DAP/26DAP0.756640.387
51DAP/34DAP1.186110.535
52DAP/51DAP0.963091
53DAP/52DAP1.000991
55DAP/53DAP0.958640.746
57DAP/55DAP0.995730.891
62DAP/57DAP1.106230.515
68DAP/62DAP0.972540.787
68DAP/14DAP0.931231

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.951880.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.330590.176
Mature Green Tomato/Ripe Tomato0.512320.051
Immature Eggplant/Mature Eggplant1.75250.061
Ripe Pepper/Ripe Tomato0.504260.224
Mature Eggplant/Ripe Tomato0.470770.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.968250.944
1-1-2/M820.89685
12-2/M820.948760.955
12-4/M821.095031
1-3/M820.935321
2-1-1/M821.02252
2-1/M821.12516
2-6/M821.113370.329
3-2/M821.2286
4-1-1/M820.986941
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.97409
5-3/M821.091531
6-2/M820.99273
6-3/M820.958011
7-1/M821.26347
7-2/M820.947410.599
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.177280.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.919481
DC3000/delta hrp 6h0.901740.95
DC3000/delta hrp 12h0.98611
DC3000/delta hrp 24h1.296830.06

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.358080.408
DC3000 delta B/DC3000 delta AB1.394610.166

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.092811
Exp 36h1.177710.326
Exp 60h1.225060.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.936361
Var 0h1.434920.936
Var 12h I row2-row11.166360.242
Var 12h NI row2-row10.821650.443
Var 36h I row2-row11.081360.742
Var 36h NI row2-row10.701661
Var 60h I row2-row11.014121
Var 60h NI row2-row10.961881
Time course 0hI-0hNI1.093760.63
Time course 12hI-12hNI1.175040.097
Time course 36hI-36hNI1.313730.05
Time course 60hI-60hNI1.651030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.137290.326
transgenic ySAMdc/azygous control (breaker)0.762190.15
transgenic ySAMdc/azygous control (red)0.922121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008110.723

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.143830.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.877991
Manapal/WT (break)1.005781
Manapal/WT (red)0.872760.424