Expression of 1-1-1.4.15.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88598 | 0.427 |
27DAP/17DAP | 0.89355 | 0.754 |
39DAP/27DAP | 1.62019 | 0.229 |
41DAP/39DAP | 1.18123 | 0.822 |
42DAP/41DAP | 1.07967 | 0.898 |
43DAP/42DAP | 0.85219 | 0.606 |
47DAP/43DAP | 1.27389 | 0.442 |
52DAP/47DAP | 1.27383 | 0.657 |
57DAP/52DAP | 0.97521 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03445 | 0.76 |
17DAP/reference | 1.01965 | 0.585 |
27DAP/reference | 0.92051 | 0.249 |
39DAP/reference | 0.95579 | 0.333 |
41DAP/reference | 1.09019 | 0.079 |
42DAP/reference | 0.96836 | 0.225 |
43DAP/reference | 1.08027 | 0.111 |
47DAP/reference | 0.971 | 0.345 |
52DAP/reference | 1.0117 | 1 |
57DAP/reference | 0.87185 | 0.047 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85959 | 0.311 |
27DAP/17DAP | 1.15689 | 0.621 |
39DAP/27DAP | 1.08027 | 0.643 |
41DAP/39DAP | 1.00071 | 1 |
42DAP/41DAP | 1.24095 | 0.415 |
43DAP/42DAP | 1.23192 | 0.017 |
47DAP/43DAP | 1.08001 | 0.758 |
52DAP/47DAP | 0.95329 | 0.801 |
57DAP/52DAP | 0.94402 | 0.651 |
57DAP/7DAP | 0.71752 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18005 | 0.274 |
17DAP/reference | 1.09135 | 0.754 |
27DAP/reference | 0.88018 | 0.076 |
39DAP/reference | 0.91063 | 0.049 |
41DAP/reference | 1.06685 | 0.767 |
42DAP/reference | 0.97418 | 0.506 |
43DAP/reference | 1.07324 | 0.307 |
47DAP/reference | 1.01335 | 1 |
52DAP/reference | 1.00125 | 0.74 |
57DAP/reference | 1.13045 | 0.147 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20979 | 0.124 |
17DAP/reference | 1.07077 | 0.723 |
27DAP/reference | 0.95904 | 0.381 |
39DAP/reference | 0.97908 | 0.497 |
41DAP/reference | 0.91122 | 0.108 |
42DAP/reference | 0.80356 | 0.022 |
43DAP/reference | 0.93345 | 0.361 |
47DAP/reference | 0.85947 | 0.021 |
52DAP/reference | 1.04869 | 0.559 |
57DAP/reference | 1.23597 | 0.172 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13547 | 0.212 |
17DAP/reference | 1.03421 | 0.784 |
27DAP/reference | 1.0967 | 0.575 |
39DAP/reference | 0.94774 | 0.393 |
41DAP/reference | 0.84262 | 0.167 |
42DAP/reference | 0.88975 | 0.22 |
43DAP/reference | 0.77966 | 0.084 |
47DAP/reference | 0.94666 | 0.348 |
52DAP/reference | 0.86732 | 0.262 |
57DAP/reference | 0.79436 | 0.07 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16111 | 0.966 |
26DAP/20DAP | 1.05826 | 0.865 |
34DAP/26DAP | 0.75664 | 0.387 |
51DAP/34DAP | 1.18611 | 0.535 |
52DAP/51DAP | 0.96309 | 1 |
53DAP/52DAP | 1.00099 | 1 |
55DAP/53DAP | 0.95864 | 0.746 |
57DAP/55DAP | 0.99573 | 0.891 |
62DAP/57DAP | 1.10623 | 0.515 |
68DAP/62DAP | 0.97254 | 0.787 |
68DAP/14DAP | 0.93123 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95188 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.33059 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.51232 | 0.051 |
Immature Eggplant/Mature Eggplant | 1.7525 | 0.061 |
Ripe Pepper/Ripe Tomato | 0.50426 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.47077 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96825 | 0.944 |
1-1-2/M82 | 0.89685 | |
12-2/M82 | 0.94876 | 0.955 |
12-4/M82 | 1.09503 | 1 |
1-3/M82 | 0.93532 | 1 |
2-1-1/M82 | 1.02252 | |
2-1/M82 | 1.12516 | |
2-6/M82 | 1.11337 | 0.329 |
3-2/M82 | 1.2286 | |
4-1-1/M82 | 0.98694 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.97409 | |
5-3/M82 | 1.09153 | 1 |
6-2/M82 | 0.99273 | |
6-3/M82 | 0.95801 | 1 |
7-1/M82 | 1.26347 | |
7-2/M82 | 0.94741 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17728 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91948 | 1 |
DC3000/delta hrp 6h | 0.90174 | 0.95 |
DC3000/delta hrp 12h | 0.9861 | 1 |
DC3000/delta hrp 24h | 1.29683 | 0.06 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.35808 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.39461 | 0.166 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09281 | 1 |
Exp 36h | 1.17771 | 0.326 |
Exp 60h | 1.22506 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93636 | 1 |
Var 0h | 1.43492 | 0.936 |
Var 12h I row2-row1 | 1.16636 | 0.242 |
Var 12h NI row2-row1 | 0.82165 | 0.443 |
Var 36h I row2-row1 | 1.08136 | 0.742 |
Var 36h NI row2-row1 | 0.70166 | 1 |
Var 60h I row2-row1 | 1.01412 | 1 |
Var 60h NI row2-row1 | 0.96188 | 1 |
Time course 0hI-0hNI | 1.09376 | 0.63 |
Time course 12hI-12hNI | 1.17504 | 0.097 |
Time course 36hI-36hNI | 1.31373 | 0.05 |
Time course 60hI-60hNI | 1.65103 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13729 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 0.76219 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.92212 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00811 | 0.723 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.14383 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87799 | 1 |
Manapal/WT (break) | 1.00578 | 1 |
Manapal/WT (red) | 0.87276 | 0.424 |
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