Expression of 1-1-1.4.16.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03370.847
27DAP/17DAP1.032151
39DAP/27DAP1.089510.885
41DAP/39DAP0.910420.545
42DAP/41DAP1.110340.941
43DAP/42DAP1.139431
47DAP/43DAP1.055330.793
52DAP/47DAP0.980830.875
57DAP/52DAP1.374390.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.978580.55
17DAP/reference1.10420.508
27DAP/reference0.980360.668
39DAP/reference1.318540.186
41DAP/reference1.105990.451
42DAP/reference1.198910.041
43DAP/reference0.880230.234
47DAP/reference1.238240.05
52DAP/reference1.263050.014
57DAP/reference1.267320.05

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.257840.176
27DAP/17DAP1.043530.885
39DAP/27DAP0.905060.304
41DAP/39DAP1.146980.663
42DAP/41DAP0.893390.243
43DAP/42DAP0.798140.024
47DAP/43DAP0.981170.896
52DAP/47DAP0.934460.719
57DAP/52DAP0.92180.524
57DAP/7DAP0.943621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963330.495
17DAP/reference0.953040.253
27DAP/reference0.85990.088
39DAP/reference0.88210.17
41DAP/reference0.83440.098
42DAP/reference0.7180.011
43DAP/reference0.897840.139
47DAP/reference1.023611
52DAP/reference0.920860.035
57DAP/reference1.093210.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.102820.724
17DAP/reference1.429610.33
27DAP/reference1.283120.095
39DAP/reference0.888830.33
41DAP/reference1.06730.893
42DAP/reference1.151780.281
43DAP/reference0.895480.361
47DAP/reference0.997450.73
52DAP/reference0.973030.5
57DAP/reference1.148020.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033860.809
17DAP/reference0.994490.763
27DAP/reference0.863790.14
39DAP/reference0.993630.755
41DAP/reference0.843620.264
42DAP/reference0.93350.361
43DAP/reference1.173810.432
47DAP/reference1.004170.731
52DAP/reference1.184110.398
57DAP/reference1.058410.758

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.77604
26DAP/20DAP1.424880.141
34DAP/26DAP1.089381
51DAP/34DAP1.060280.746
52DAP/51DAP0.707450.079
53DAP/52DAP1.078730.723
55DAP/53DAP0.796140.077
57DAP/55DAP1.256010.376
62DAP/57DAP0.773840.162
68DAP/62DAP1.092420.984
68DAP/14DAP0.728770.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.986380.665

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.92430.527
Mature Green Tomato/Ripe Tomato1.042840.835
Immature Eggplant/Mature Eggplant1.373820.05
Ripe Pepper/Ripe Tomato2.41760.258
Mature Eggplant/Ripe Tomato1.689390.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.862550.841
1-1-2/M821.36771
12-2/M820.934930.955
12-4/M820.83126
1-3/M821.46912
2-1-1/M820.93740.465
2-1/M820.87782
2-6/M820.64635
3-2/M82N/AN/A
4-1-1/M820.94518
4-1/M821.27984
4-3-2/M821.17464
4-3/M820.928920.578
5-3/M821.191940.496
6-2/M821.001841
6-3/M820.886421
7-1/M821.235960.598
7-2/M821.220881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.006141
IL2-6/WTpooled1.028590.788
IL7-5/WTpooled0.687491
IL7-3/WTpooled1.094131
IL12-4/WTpooled1.115520.646
IL1-4/WTpooled1.022611
WT/WTpooled0.976961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.07450.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.082430.846
DC3000/delta hrp 6h0.966530.95
DC3000/delta hrp 12h1.027011
DC3000/delta hrp 24h1.58250.03

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.155920.042
DC3000 delta B/DC3000 delta AB1.217150.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.029331
Exp 36h1.391580.489
Exp 60h1.29220.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.277621
Var 0h0.957831
Var 12h I row2-row11.01231
Var 12h NI row2-row11.189720.649
Var 36h I row2-row11.182010.368
Var 36h NI row2-row10.58370.329
Var 60h I row2-row10.934390.832
Var 60h NI row2-row10.814370.292
Time course 0hI-0hNI0.889930.204
Time course 12hI-12hNI1.052050.654
Time course 36hI-36hNI1.33530.039
Time course 60hI-60hNI1.353880.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.00820.863
transgenic ySAMdc/azygous control (breaker)1.067741
transgenic ySAMdc/azygous control (red)0.874391

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990970.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.896740.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.884771
Manapal/WT (break)0.972691
Manapal/WT (red)1.442630.222