Expression of 1-1-1.4.16.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0337 | 0.847 |
27DAP/17DAP | 1.03215 | 1 |
39DAP/27DAP | 1.08951 | 0.885 |
41DAP/39DAP | 0.91042 | 0.545 |
42DAP/41DAP | 1.11034 | 0.941 |
43DAP/42DAP | 1.13943 | 1 |
47DAP/43DAP | 1.05533 | 0.793 |
52DAP/47DAP | 0.98083 | 0.875 |
57DAP/52DAP | 1.37439 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97858 | 0.55 |
17DAP/reference | 1.1042 | 0.508 |
27DAP/reference | 0.98036 | 0.668 |
39DAP/reference | 1.31854 | 0.186 |
41DAP/reference | 1.10599 | 0.451 |
42DAP/reference | 1.19891 | 0.041 |
43DAP/reference | 0.88023 | 0.234 |
47DAP/reference | 1.23824 | 0.05 |
52DAP/reference | 1.26305 | 0.014 |
57DAP/reference | 1.26732 | 0.05 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25784 | 0.176 |
27DAP/17DAP | 1.04353 | 0.885 |
39DAP/27DAP | 0.90506 | 0.304 |
41DAP/39DAP | 1.14698 | 0.663 |
42DAP/41DAP | 0.89339 | 0.243 |
43DAP/42DAP | 0.79814 | 0.024 |
47DAP/43DAP | 0.98117 | 0.896 |
52DAP/47DAP | 0.93446 | 0.719 |
57DAP/52DAP | 0.9218 | 0.524 |
57DAP/7DAP | 0.94362 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96333 | 0.495 |
17DAP/reference | 0.95304 | 0.253 |
27DAP/reference | 0.8599 | 0.088 |
39DAP/reference | 0.8821 | 0.17 |
41DAP/reference | 0.8344 | 0.098 |
42DAP/reference | 0.718 | 0.011 |
43DAP/reference | 0.89784 | 0.139 |
47DAP/reference | 1.02361 | 1 |
52DAP/reference | 0.92086 | 0.035 |
57DAP/reference | 1.09321 | 0.125 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10282 | 0.724 |
17DAP/reference | 1.42961 | 0.33 |
27DAP/reference | 1.28312 | 0.095 |
39DAP/reference | 0.88883 | 0.33 |
41DAP/reference | 1.0673 | 0.893 |
42DAP/reference | 1.15178 | 0.281 |
43DAP/reference | 0.89548 | 0.361 |
47DAP/reference | 0.99745 | 0.73 |
52DAP/reference | 0.97303 | 0.5 |
57DAP/reference | 1.14802 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03386 | 0.809 |
17DAP/reference | 0.99449 | 0.763 |
27DAP/reference | 0.86379 | 0.14 |
39DAP/reference | 0.99363 | 0.755 |
41DAP/reference | 0.84362 | 0.264 |
42DAP/reference | 0.9335 | 0.361 |
43DAP/reference | 1.17381 | 0.432 |
47DAP/reference | 1.00417 | 0.731 |
52DAP/reference | 1.18411 | 0.398 |
57DAP/reference | 1.05841 | 0.758 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.77604 | |
26DAP/20DAP | 1.42488 | 0.141 |
34DAP/26DAP | 1.08938 | 1 |
51DAP/34DAP | 1.06028 | 0.746 |
52DAP/51DAP | 0.70745 | 0.079 |
53DAP/52DAP | 1.07873 | 0.723 |
55DAP/53DAP | 0.79614 | 0.077 |
57DAP/55DAP | 1.25601 | 0.376 |
62DAP/57DAP | 0.77384 | 0.162 |
68DAP/62DAP | 1.09242 | 0.984 |
68DAP/14DAP | 0.72877 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98638 | 0.665 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9243 | 0.527 |
Mature Green Tomato/Ripe Tomato | 1.04284 | 0.835 |
Immature Eggplant/Mature Eggplant | 1.37382 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.4176 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.68939 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86255 | 0.841 |
1-1-2/M82 | 1.3677 | 1 |
12-2/M82 | 0.93493 | 0.955 |
12-4/M82 | 0.83126 | |
1-3/M82 | 1.46912 | |
2-1-1/M82 | 0.9374 | 0.465 |
2-1/M82 | 0.87782 | |
2-6/M82 | 0.64635 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.94518 | |
4-1/M82 | 1.27984 | |
4-3-2/M82 | 1.17464 | |
4-3/M82 | 0.92892 | 0.578 |
5-3/M82 | 1.19194 | 0.496 |
6-2/M82 | 1.00184 | 1 |
6-3/M82 | 0.88642 | 1 |
7-1/M82 | 1.23596 | 0.598 |
7-2/M82 | 1.22088 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00614 | 1 |
IL2-6/WTpooled | 1.02859 | 0.788 |
IL7-5/WTpooled | 0.68749 | 1 |
IL7-3/WTpooled | 1.09413 | 1 |
IL12-4/WTpooled | 1.11552 | 0.646 |
IL1-4/WTpooled | 1.02261 | 1 |
WT/WTpooled | 0.97696 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0745 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08243 | 0.846 |
DC3000/delta hrp 6h | 0.96653 | 0.95 |
DC3000/delta hrp 12h | 1.02701 | 1 |
DC3000/delta hrp 24h | 1.5825 | 0.03 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15592 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.21715 | 0.288 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02933 | 1 |
Exp 36h | 1.39158 | 0.489 |
Exp 60h | 1.2922 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.27762 | 1 |
Var 0h | 0.95783 | 1 |
Var 12h I row2-row1 | 1.0123 | 1 |
Var 12h NI row2-row1 | 1.18972 | 0.649 |
Var 36h I row2-row1 | 1.18201 | 0.368 |
Var 36h NI row2-row1 | 0.5837 | 0.329 |
Var 60h I row2-row1 | 0.93439 | 0.832 |
Var 60h NI row2-row1 | 0.81437 | 0.292 |
Time course 0hI-0hNI | 0.88993 | 0.204 |
Time course 12hI-12hNI | 1.05205 | 0.654 |
Time course 36hI-36hNI | 1.3353 | 0.039 |
Time course 60hI-60hNI | 1.35388 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0082 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.06774 | 1 |
transgenic ySAMdc/azygous control (red) | 0.87439 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99097 | 0.712 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89674 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88477 | 1 |
Manapal/WT (break) | 0.97269 | 1 |
Manapal/WT (red) | 1.44263 | 0.222 |
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