Expression of 1-1-1.4.16.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43572 | 0.463 |
27DAP/17DAP | 1.40205 | 0.801 |
39DAP/27DAP | 1.56422 | 0.113 |
41DAP/39DAP | 0.69309 | 0.109 |
42DAP/41DAP | 1.09086 | 0.994 |
43DAP/42DAP | 1.28994 | 1 |
47DAP/43DAP | 1.79181 | 0.513 |
52DAP/47DAP | 0.99947 | 0.781 |
57DAP/52DAP | 1.53331 | 0.883 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96395 | 0.293 |
17DAP/reference | 0.92231 | 0.028 |
27DAP/reference | 1.01906 | 0.648 |
39DAP/reference | 0.98889 | 0.828 |
41DAP/reference | 0.95181 | 0.154 |
42DAP/reference | 1.02529 | 0.544 |
43DAP/reference | 1.01447 | 0.838 |
47DAP/reference | 1.10208 | 0.032 |
52DAP/reference | 1.04638 | 0.149 |
57DAP/reference | 1.06114 | 0.447 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15424 | 0.189 |
27DAP/17DAP | 1.27032 | 0.403 |
39DAP/27DAP | 0.8263 | 0.356 |
41DAP/39DAP | 1.38815 | 0.868 |
42DAP/41DAP | 1.00197 | 0.858 |
43DAP/42DAP | 0.96405 | 0.709 |
47DAP/43DAP | 1.01884 | 1 |
52DAP/47DAP | 0.9635 | 0.884 |
57DAP/52DAP | 0.97198 | 0.737 |
57DAP/7DAP | 1.04279 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13072 | 0.311 |
17DAP/reference | 1.20698 | 0.01 |
27DAP/reference | 1.17168 | 0.088 |
39DAP/reference | 1.2347 | 0.013 |
41DAP/reference | 1.13771 | 0.177 |
42DAP/reference | 1.20705 | 0.132 |
43DAP/reference | 1.18056 | 0.023 |
47DAP/reference | 1.1871 | 0.165 |
52DAP/reference | 1.25711 | 0.023 |
57DAP/reference | 1.16447 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88614 | 0.164 |
17DAP/reference | 1.01757 | 0.999 |
27DAP/reference | 1.11077 | 0.471 |
39DAP/reference | 1.1144 | 0.316 |
41DAP/reference | 1.02387 | 1 |
42DAP/reference | 1.15866 | 0.488 |
43DAP/reference | 0.92584 | 0.361 |
47DAP/reference | 1.00664 | 1 |
52DAP/reference | 0.89755 | 0.031 |
57DAP/reference | 0.9223 | 0.338 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91476 | 0.183 |
17DAP/reference | 0.87858 | 0.162 |
27DAP/reference | 0.95033 | 0.286 |
39DAP/reference | 1.04179 | 0.691 |
41DAP/reference | 0.96972 | 0.417 |
42DAP/reference | 1.2533 | 0.089 |
43DAP/reference | 1.19835 | 0.047 |
47DAP/reference | 1.03331 | 0.934 |
52DAP/reference | 1.32573 | 0.198 |
57DAP/reference | 1.4142 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0805 | 0.966 |
26DAP/20DAP | 1.65097 | 0.117 |
34DAP/26DAP | 1.13476 | 1 |
51DAP/34DAP | 1.29057 | 0.232 |
52DAP/51DAP | 0.71317 | 1 |
53DAP/52DAP | 1.23085 | 0.204 |
55DAP/53DAP | 0.94604 | 0.619 |
57DAP/55DAP | 1.19129 | 0.764 |
62DAP/57DAP | 0.89207 | 0.466 |
68DAP/62DAP | 1.31217 | 0.455 |
68DAP/14DAP | 1.16816 | 0.279 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.93698 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00279 | 0.908 |
Mature Green Tomato/Ripe Tomato | 0.85701 | 0.226 |
Immature Eggplant/Mature Eggplant | 1.35507 | 0.057 |
Ripe Pepper/Ripe Tomato | 0.87869 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.79973 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98724 | 0.961 |
1-1-2/M82 | 1.29115 | 1 |
12-2/M82 | 0.86343 | 0.862 |
12-4/M82 | 1.29898 | 1 |
1-3/M82 | 2.06223 | 1 |
2-1-1/M82 | 1.02426 | 1 |
2-1/M82 | 0.89894 | 0.74 |
2-6/M82 | 1.17005 | 0.452 |
3-2/M82 | 1.06595 | 1 |
4-1-1/M82 | 0.925 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.34758 | |
4-3/M82 | 1.35727 | 1 |
5-3/M82 | 1.09887 | 1 |
6-2/M82 | 1.47823 | 0.253 |
6-3/M82 | 1.08489 | 1 |
7-1/M82 | 0.89689 | 0.803 |
7-2/M82 | 1.39122 | 1 |
9-3-2/M82 | 1.40406 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.15172 | 0.277 |
IL2-6/WTpooled | 0.86706 | 1 |
IL7-5/WTpooled | 1.02993 | 1 |
IL7-3/WTpooled | 1.16189 | 1 |
IL12-4/WTpooled | 0.9374 | 1 |
IL1-4/WTpooled | 0.69685 | 0.415 |
WT/WTpooled | 1.06003 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97351 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03301 | 0.921 |
DC3000/delta hrp 6h | 1.01889 | 0.95 |
DC3000/delta hrp 12h | 1.12737 | 1 |
DC3000/delta hrp 24h | 1.063 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.26155 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.27942 | 0.2 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17879 | 1 |
Exp 36h | 1.05411 | 1 |
Exp 60h | 1.28135 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01335 | 1 |
Var 0h | 0.62263 | 0.216 |
Var 12h I row2-row1 | 1.04776 | 0.795 |
Var 12h NI row2-row1 | 1.10153 | 1 |
Var 36h I row2-row1 | 1.13213 | 0.601 |
Var 36h NI row2-row1 | 0.88782 | 0.522 |
Var 60h I row2-row1 | 0.81416 | 0.306 |
Var 60h NI row2-row1 | 0.93997 | 1 |
Time course 0hI-0hNI | 0.975 | 0.9 |
Time course 12hI-12hNI | 1.10084 | 0.867 |
Time course 36hI-36hNI | 1.42016 | 0.011 |
Time course 60hI-60hNI | 2.41771 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0292 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.09231 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.0283 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.2416 | 0.037 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84478 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80772 | 0.172 |
Manapal/WT (break) | 0.81139 | 0.262 |
Manapal/WT (red) | 1.15289 | 0.413 |
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