Expression of 1-1-1.4.16.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.435720.463
27DAP/17DAP1.402050.801
39DAP/27DAP1.564220.113
41DAP/39DAP0.693090.109
42DAP/41DAP1.090860.994
43DAP/42DAP1.289941
47DAP/43DAP1.791810.513
52DAP/47DAP0.999470.781
57DAP/52DAP1.533310.883

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.963950.293
17DAP/reference0.922310.028
27DAP/reference1.019060.648
39DAP/reference0.988890.828
41DAP/reference0.951810.154
42DAP/reference1.025290.544
43DAP/reference1.014470.838
47DAP/reference1.102080.032
52DAP/reference1.046380.149
57DAP/reference1.061140.447

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.154240.189
27DAP/17DAP1.270320.403
39DAP/27DAP0.82630.356
41DAP/39DAP1.388150.868
42DAP/41DAP1.001970.858
43DAP/42DAP0.964050.709
47DAP/43DAP1.018841
52DAP/47DAP0.96350.884
57DAP/52DAP0.971980.737
57DAP/7DAP1.042791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.130720.311
17DAP/reference1.206980.01
27DAP/reference1.171680.088
39DAP/reference1.23470.013
41DAP/reference1.137710.177
42DAP/reference1.207050.132
43DAP/reference1.180560.023
47DAP/reference1.18710.165
52DAP/reference1.257110.023
57DAP/reference1.164470.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.886140.164
17DAP/reference1.017570.999
27DAP/reference1.110770.471
39DAP/reference1.11440.316
41DAP/reference1.023871
42DAP/reference1.158660.488
43DAP/reference0.925840.361
47DAP/reference1.006641
52DAP/reference0.897550.031
57DAP/reference0.92230.338

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914760.183
17DAP/reference0.878580.162
27DAP/reference0.950330.286
39DAP/reference1.041790.691
41DAP/reference0.969720.417
42DAP/reference1.25330.089
43DAP/reference1.198350.047
47DAP/reference1.033310.934
52DAP/reference1.325730.198
57DAP/reference1.41420.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.08050.966
26DAP/20DAP1.650970.117
34DAP/26DAP1.134761
51DAP/34DAP1.290570.232
52DAP/51DAP0.713171
53DAP/52DAP1.230850.204
55DAP/53DAP0.946040.619
57DAP/55DAP1.191290.764
62DAP/57DAP0.892070.466
68DAP/62DAP1.312170.455
68DAP/14DAP1.168160.279

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.936980.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.002790.908
Mature Green Tomato/Ripe Tomato0.857010.226
Immature Eggplant/Mature Eggplant1.355070.057
Ripe Pepper/Ripe Tomato0.878690.293
Mature Eggplant/Ripe Tomato0.799731

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.987240.961
1-1-2/M821.291151
12-2/M820.863430.862
12-4/M821.298981
1-3/M822.062231
2-1-1/M821.024261
2-1/M820.898940.74
2-6/M821.170050.452
3-2/M821.065951
4-1-1/M820.9251
4-1/M82N/AN/A
4-3-2/M821.34758
4-3/M821.357271
5-3/M821.098871
6-2/M821.478230.253
6-3/M821.084891
7-1/M820.896890.803
7-2/M821.391221
9-3-2/M821.404061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.151720.277
IL2-6/WTpooled0.867061
IL7-5/WTpooled1.029931
IL7-3/WTpooled1.161891
IL12-4/WTpooled0.93741
IL1-4/WTpooled0.696850.415
WT/WTpooled1.060031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.973511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.033010.921
DC3000/delta hrp 6h1.018890.95
DC3000/delta hrp 12h1.127371
DC3000/delta hrp 24h1.0630.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.261550.042
DC3000 delta B/DC3000 delta AB1.279420.2

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.178791
Exp 36h1.054111
Exp 60h1.281350.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013351
Var 0h0.622630.216
Var 12h I row2-row11.047760.795
Var 12h NI row2-row11.101531
Var 36h I row2-row11.132130.601
Var 36h NI row2-row10.887820.522
Var 60h I row2-row10.814160.306
Var 60h NI row2-row10.939971
Time course 0hI-0hNI0.9750.9
Time course 12hI-12hNI1.100840.867
Time course 36hI-36hNI1.420160.011
Time course 60hI-60hNI2.417710.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.02920.863
transgenic ySAMdc/azygous control (breaker)1.092310.248
transgenic ySAMdc/azygous control (red)1.02831

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.24160.037

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.844780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.807720.172
Manapal/WT (break)0.811390.262
Manapal/WT (red)1.152890.413