Expression of 1-1-1.4.18.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969410.779
27DAP/17DAP1.11960.845
39DAP/27DAP0.732570.399
41DAP/39DAP1.558290.212
42DAP/41DAP0.968941
43DAP/42DAP1.140030.88
47DAP/43DAP1.098440.702
52DAP/47DAP1.021420.997
57DAP/52DAP1.084870.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.930350.106
17DAP/reference1.01980.193
27DAP/reference0.976360.525
39DAP/reference0.967650.437
41DAP/reference0.898820.049
42DAP/reference0.87810.004
43DAP/reference1.078970.111
47DAP/reference0.860630.005
52DAP/reference0.853810.073
57DAP/reference0.755520.035

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.952680.56
27DAP/17DAP0.985510.887
39DAP/27DAP1.061080.548
41DAP/39DAP0.97870.98
42DAP/41DAP1.014471
43DAP/42DAP0.999071
47DAP/43DAP0.998120.989
52DAP/47DAP0.981390.907
57DAP/52DAP0.950780.598
57DAP/7DAP1.177451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942580.361
17DAP/reference0.816290.011
27DAP/reference0.753840.01
39DAP/reference0.800960.095
41DAP/reference0.964190.394
42DAP/reference0.902340.151
43DAP/reference0.925460.266
47DAP/reference0.920060.222
52DAP/reference0.842090.049
57DAP/reference0.957220.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91770.374
17DAP/reference0.933240.287
27DAP/reference0.878210.155
39DAP/reference0.881690.113
41DAP/reference0.812010.071
42DAP/reference0.882620.089
43DAP/reference0.890650.181
47DAP/reference0.866090.034
52DAP/reference0.891050.012
57DAP/reference1.095540.567

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850290.112
17DAP/reference0.957770.537
27DAP/reference0.827090.031
39DAP/reference0.907860.147
41DAP/reference0.877630.086
42DAP/reference0.724610.049
43DAP/reference0.696440.025
47DAP/reference0.95340.383
52DAP/reference0.913950.455
57DAP/reference0.594710.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.032550.966
26DAP/20DAP1.04221
34DAP/26DAP0.956850.803
51DAP/34DAP1.044860.785
52DAP/51DAP0.977141
53DAP/52DAP1.168750.134
55DAP/53DAP0.90260.313
57DAP/55DAP1.200750.324
62DAP/57DAP1.051960.8
68DAP/62DAP0.970170.787
68DAP/14DAP1.009251

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.707490.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.694040.187
Mature Green Tomato/Ripe Tomato0.862430.256
Immature Eggplant/Mature Eggplant1.822250.05
Ripe Pepper/Ripe Tomato2.55660.258
Mature Eggplant/Ripe Tomato1.46931

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.845240.883
1-1-2/M820.809921
12-2/M821.109921
12-4/M820.852671
1-3/M820.892290.441
2-1-1/M821.252740.3
2-1/M821.28141
2-6/M821.209960.594
3-2/M82N/AN/A
4-1-1/M821.002551
4-1/M820.989211
4-3-2/M821.071351
4-3/M820.874841
5-3/M821.004631
6-2/M820.839070.497
6-3/M821.01781
7-1/M820.87577
7-2/M821.130871
9-3-2/M820.84460.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.1720.277
IL2-6/WTpooled0.906380.348
IL7-5/WTpooled1.12510.792
IL7-3/WTpooled1.255191
IL12-4/WTpooled1.381540.532
IL1-4/WTpooled1.08450.426
WT/WTpooled1.053671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.827970.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.978171
DC3000/delta hrp 6h1.034230.95
DC3000/delta hrp 12h1.275041
DC3000/delta hrp 24h1.076610.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.092080.355
DC3000 delta B/DC3000 delta AB1.073650.491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.97091
Exp 36h1.400121
Exp 60h1.474680.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977041
Var 0h0.982891
Var 12h I row2-row11.13110.324
Var 12h NI row2-row10.920610.713
Var 36h I row2-row10.951880.805
Var 36h NI row2-row11.131691
Var 60h I row2-row11.147840.543
Var 60h NI row2-row11.121620.904
Time course 0hI-0hNI1.029460.764
Time course 12hI-12hNI1.013570.85
Time course 36hI-36hNI1.037840.248
Time course 60hI-60hNI1.312870.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.070380.238
transgenic ySAMdc/azygous control (breaker)1.438830.178
transgenic ySAMdc/azygous control (red)0.851771

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.04850.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.333820.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.905290.172
Manapal/WT (break)1.031871
Manapal/WT (red)1.15451