Expression of 1-1-1.4.18.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96941 | 0.779 |
27DAP/17DAP | 1.1196 | 0.845 |
39DAP/27DAP | 0.73257 | 0.399 |
41DAP/39DAP | 1.55829 | 0.212 |
42DAP/41DAP | 0.96894 | 1 |
43DAP/42DAP | 1.14003 | 0.88 |
47DAP/43DAP | 1.09844 | 0.702 |
52DAP/47DAP | 1.02142 | 0.997 |
57DAP/52DAP | 1.08487 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93035 | 0.106 |
17DAP/reference | 1.0198 | 0.193 |
27DAP/reference | 0.97636 | 0.525 |
39DAP/reference | 0.96765 | 0.437 |
41DAP/reference | 0.89882 | 0.049 |
42DAP/reference | 0.8781 | 0.004 |
43DAP/reference | 1.07897 | 0.111 |
47DAP/reference | 0.86063 | 0.005 |
52DAP/reference | 0.85381 | 0.073 |
57DAP/reference | 0.75552 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95268 | 0.56 |
27DAP/17DAP | 0.98551 | 0.887 |
39DAP/27DAP | 1.06108 | 0.548 |
41DAP/39DAP | 0.9787 | 0.98 |
42DAP/41DAP | 1.01447 | 1 |
43DAP/42DAP | 0.99907 | 1 |
47DAP/43DAP | 0.99812 | 0.989 |
52DAP/47DAP | 0.98139 | 0.907 |
57DAP/52DAP | 0.95078 | 0.598 |
57DAP/7DAP | 1.17745 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94258 | 0.361 |
17DAP/reference | 0.81629 | 0.011 |
27DAP/reference | 0.75384 | 0.01 |
39DAP/reference | 0.80096 | 0.095 |
41DAP/reference | 0.96419 | 0.394 |
42DAP/reference | 0.90234 | 0.151 |
43DAP/reference | 0.92546 | 0.266 |
47DAP/reference | 0.92006 | 0.222 |
52DAP/reference | 0.84209 | 0.049 |
57DAP/reference | 0.95722 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9177 | 0.374 |
17DAP/reference | 0.93324 | 0.287 |
27DAP/reference | 0.87821 | 0.155 |
39DAP/reference | 0.88169 | 0.113 |
41DAP/reference | 0.81201 | 0.071 |
42DAP/reference | 0.88262 | 0.089 |
43DAP/reference | 0.89065 | 0.181 |
47DAP/reference | 0.86609 | 0.034 |
52DAP/reference | 0.89105 | 0.012 |
57DAP/reference | 1.09554 | 0.567 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85029 | 0.112 |
17DAP/reference | 0.95777 | 0.537 |
27DAP/reference | 0.82709 | 0.031 |
39DAP/reference | 0.90786 | 0.147 |
41DAP/reference | 0.87763 | 0.086 |
42DAP/reference | 0.72461 | 0.049 |
43DAP/reference | 0.69644 | 0.025 |
47DAP/reference | 0.9534 | 0.383 |
52DAP/reference | 0.91395 | 0.455 |
57DAP/reference | 0.59471 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03255 | 0.966 |
26DAP/20DAP | 1.0422 | 1 |
34DAP/26DAP | 0.95685 | 0.803 |
51DAP/34DAP | 1.04486 | 0.785 |
52DAP/51DAP | 0.97714 | 1 |
53DAP/52DAP | 1.16875 | 0.134 |
55DAP/53DAP | 0.9026 | 0.313 |
57DAP/55DAP | 1.20075 | 0.324 |
62DAP/57DAP | 1.05196 | 0.8 |
68DAP/62DAP | 0.97017 | 0.787 |
68DAP/14DAP | 1.00925 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70749 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.69404 | 0.187 |
Mature Green Tomato/Ripe Tomato | 0.86243 | 0.256 |
Immature Eggplant/Mature Eggplant | 1.82225 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.5566 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.4693 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.84524 | 0.883 |
1-1-2/M82 | 0.80992 | 1 |
12-2/M82 | 1.10992 | 1 |
12-4/M82 | 0.85267 | 1 |
1-3/M82 | 0.89229 | 0.441 |
2-1-1/M82 | 1.25274 | 0.3 |
2-1/M82 | 1.2814 | 1 |
2-6/M82 | 1.20996 | 0.594 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.00255 | 1 |
4-1/M82 | 0.98921 | 1 |
4-3-2/M82 | 1.07135 | 1 |
4-3/M82 | 0.87484 | 1 |
5-3/M82 | 1.00463 | 1 |
6-2/M82 | 0.83907 | 0.497 |
6-3/M82 | 1.0178 | 1 |
7-1/M82 | 0.87577 | |
7-2/M82 | 1.13087 | 1 |
9-3-2/M82 | 0.8446 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.172 | 0.277 |
IL2-6/WTpooled | 0.90638 | 0.348 |
IL7-5/WTpooled | 1.1251 | 0.792 |
IL7-3/WTpooled | 1.25519 | 1 |
IL12-4/WTpooled | 1.38154 | 0.532 |
IL1-4/WTpooled | 1.0845 | 0.426 |
WT/WTpooled | 1.05367 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82797 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97817 | 1 |
DC3000/delta hrp 6h | 1.03423 | 0.95 |
DC3000/delta hrp 12h | 1.27504 | 1 |
DC3000/delta hrp 24h | 1.07661 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09208 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.07365 | 0.491 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9709 | 1 |
Exp 36h | 1.40012 | 1 |
Exp 60h | 1.47468 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97704 | 1 |
Var 0h | 0.98289 | 1 |
Var 12h I row2-row1 | 1.1311 | 0.324 |
Var 12h NI row2-row1 | 0.92061 | 0.713 |
Var 36h I row2-row1 | 0.95188 | 0.805 |
Var 36h NI row2-row1 | 1.13169 | 1 |
Var 60h I row2-row1 | 1.14784 | 0.543 |
Var 60h NI row2-row1 | 1.12162 | 0.904 |
Time course 0hI-0hNI | 1.02946 | 0.764 |
Time course 12hI-12hNI | 1.01357 | 0.85 |
Time course 36hI-36hNI | 1.03784 | 0.248 |
Time course 60hI-60hNI | 1.31287 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07038 | 0.238 |
transgenic ySAMdc/azygous control (breaker) | 1.43883 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.85177 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0485 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.33382 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90529 | 0.172 |
Manapal/WT (break) | 1.03187 | 1 |
Manapal/WT (red) | 1.1545 | 1 |
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