Expression of 1-1-1.4.18.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39335 | 0.575 |
27DAP/17DAP | 1.64014 | 0.847 |
39DAP/27DAP | 1.23131 | 0.566 |
41DAP/39DAP | 1.0294 | 0.866 |
42DAP/41DAP | 1.13692 | 0.994 |
43DAP/42DAP | 1.18355 | 1 |
47DAP/43DAP | 1.10941 | 0.873 |
52DAP/47DAP | 0.93549 | 0.793 |
57DAP/52DAP | 1.11264 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99639 | 0.743 |
17DAP/reference | 1.0634 | 0.064 |
27DAP/reference | 1.00072 | 0.923 |
39DAP/reference | 1.03836 | 0.218 |
41DAP/reference | 1.09881 | 0.111 |
42DAP/reference | 0.97073 | 0.242 |
43DAP/reference | 1.09362 | 0.163 |
47DAP/reference | 0.94202 | 0.174 |
52DAP/reference | 0.88263 | 0.162 |
57DAP/reference | 0.81865 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79784 | 0.164 |
27DAP/17DAP | 0.86234 | 0.164 |
39DAP/27DAP | 1.17924 | 0.418 |
41DAP/39DAP | 0.98984 | 0.98 |
42DAP/41DAP | 1.21476 | 0.389 |
43DAP/42DAP | 1.07678 | 0.413 |
47DAP/43DAP | 1.02458 | 0.951 |
52DAP/47DAP | 1.04349 | 0.927 |
57DAP/52DAP | 0.89247 | 0.424 |
57DAP/7DAP | 1.11144 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17453 | 0.491 |
17DAP/reference | 1.02903 | 1 |
27DAP/reference | 0.77498 | 0.109 |
39DAP/reference | 1.16882 | 0.175 |
41DAP/reference | 1.15561 | 0.171 |
42DAP/reference | 1.07846 | 0.686 |
43DAP/reference | 1.14511 | 0.569 |
47DAP/reference | 0.91261 | 0.383 |
52DAP/reference | 0.93358 | 0.332 |
57DAP/reference | 1.43755 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07804 | 0.695 |
17DAP/reference | 1.05956 | 0.518 |
27DAP/reference | 0.94811 | 0.393 |
39DAP/reference | 0.92809 | 0.257 |
41DAP/reference | 1.01295 | 0.702 |
42DAP/reference | 0.99638 | 0.655 |
43DAP/reference | 1.10891 | 0.655 |
47DAP/reference | 0.87441 | 0.023 |
52DAP/reference | 1.0292 | 0.882 |
57DAP/reference | 1.27198 | 0.14 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95617 | 0.526 |
17DAP/reference | 1.00062 | 0.792 |
27DAP/reference | 1.04952 | |
39DAP/reference | 1.0071 | 1 |
41DAP/reference | 1.16374 | 0.205 |
42DAP/reference | 0.96308 | 0.671 |
43DAP/reference | 0.98341 | 0.568 |
47DAP/reference | 0.98862 | 0.593 |
52DAP/reference | 0.87781 | 0.36 |
57DAP/reference | 0.69532 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14848 | 0.966 |
26DAP/20DAP | 0.7907 | 0.244 |
34DAP/26DAP | 1.00135 | 1 |
51DAP/34DAP | 1.05666 | 0.946 |
52DAP/51DAP | 1.07458 | 0.783 |
53DAP/52DAP | 0.99468 | 0.97 |
55DAP/53DAP | 1.2144 | 0.215 |
57DAP/55DAP | 1.21502 | 0.779 |
62DAP/57DAP | 1.14309 | 0.393 |
68DAP/62DAP | 0.81827 | 0.464 |
68DAP/14DAP | 0.82249 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98645 | 0.635 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.8749 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.81931 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.83471 | 1 |
Mature Eggplant/Ripe Tomato | 0.15091 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.54467 | |
1-1-2/M82 | 0.95656 | 1 |
12-2/M82 | 0.69665 | 0.639 |
12-4/M82 | 1.02072 | 1 |
1-3/M82 | 1.81716 | 1 |
2-1-1/M82 | 1.73928 | 0.457 |
2-1/M82 | 1.26455 | 1 |
2-6/M82 | 1.59704 | |
3-2/M82 | 1.14278 | |
4-1-1/M82 | 1.56248 | 0.977 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 3.72773 | 0.268 |
5-3/M82 | 0.8113 | 0.642 |
6-2/M82 | 2.09414 | 1 |
6-3/M82 | 1.49964 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.88879 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99458 | 1 |
IL2-6/WTpooled | 1.31835 | 0.419 |
IL7-5/WTpooled | 0.87238 | 1 |
IL7-3/WTpooled | 0.91251 | 0.418 |
IL12-4/WTpooled | 1.13579 | 0.673 |
IL1-4/WTpooled | 1.01457 | 1 |
WT/WTpooled | 1.0475 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99236 | 1 |
DC3000/delta hrp 6h | 1.11209 | 1 |
DC3000/delta hrp 12h | 1.12173 | 1 |
DC3000/delta hrp 24h | 1.10144 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.45877 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96706 | 1 |
Exp 36h | 1.0996 | 1 |
Exp 60h | 1.08997 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97001 | 1 |
Var 0h | 2.52639 | 0.374 |
Var 12h I row2-row1 | 1.2444 | 0.473 |
Var 12h NI row2-row1 | 0.67415 | 0.494 |
Var 36h I row2-row1 | 1.55693 | 0.41 |
Var 36h NI row2-row1 | 1.35514 | 1 |
Var 60h I row2-row1 | 0.99534 | |
Var 60h NI row2-row1 | 1.50358 | 0.904 |
Time course 0hI-0hNI | 0.95681 | 0.906 |
Time course 12hI-12hNI | 0.87626 | 0.476 |
Time course 36hI-36hNI | 0.88757 | 0.418 |
Time course 60hI-60hNI | 2.76812 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.17026 | 0.283 |
transgenic ySAMdc/azygous control (breaker) | 0.88043 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.1249 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06149 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.7197 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97652 | 1 |
Manapal/WT (break) | 0.94778 | 1 |
Manapal/WT (red) | 0.92187 | 0.607 |
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