Expression of 1-1-1.4.18.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.393350.575
27DAP/17DAP1.640140.847
39DAP/27DAP1.231310.566
41DAP/39DAP1.02940.866
42DAP/41DAP1.136920.994
43DAP/42DAP1.183551
47DAP/43DAP1.109410.873
52DAP/47DAP0.935490.793
57DAP/52DAP1.112640.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.996390.743
17DAP/reference1.06340.064
27DAP/reference1.000720.923
39DAP/reference1.038360.218
41DAP/reference1.098810.111
42DAP/reference0.970730.242
43DAP/reference1.093620.163
47DAP/reference0.942020.174
52DAP/reference0.882630.162
57DAP/reference0.818650.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.797840.164
27DAP/17DAP0.862340.164
39DAP/27DAP1.179240.418
41DAP/39DAP0.989840.98
42DAP/41DAP1.214760.389
43DAP/42DAP1.076780.413
47DAP/43DAP1.024580.951
52DAP/47DAP1.043490.927
57DAP/52DAP0.892470.424
57DAP/7DAP1.111441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.174530.491
17DAP/reference1.029031
27DAP/reference0.774980.109
39DAP/reference1.168820.175
41DAP/reference1.155610.171
42DAP/reference1.078460.686
43DAP/reference1.145110.569
47DAP/reference0.912610.383
52DAP/reference0.933580.332
57DAP/reference1.437550.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.078040.695
17DAP/reference1.059560.518
27DAP/reference0.948110.393
39DAP/reference0.928090.257
41DAP/reference1.012950.702
42DAP/reference0.996380.655
43DAP/reference1.108910.655
47DAP/reference0.874410.023
52DAP/reference1.02920.882
57DAP/reference1.271980.14

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956170.526
17DAP/reference1.000620.792
27DAP/reference1.04952
39DAP/reference1.00711
41DAP/reference1.163740.205
42DAP/reference0.963080.671
43DAP/reference0.983410.568
47DAP/reference0.988620.593
52DAP/reference0.877810.36
57DAP/reference0.695320.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.148480.966
26DAP/20DAP0.79070.244
34DAP/26DAP1.001351
51DAP/34DAP1.056660.946
52DAP/51DAP1.074580.783
53DAP/52DAP0.994680.97
55DAP/53DAP1.21440.215
57DAP/55DAP1.215020.779
62DAP/57DAP1.143090.393
68DAP/62DAP0.818270.464
68DAP/14DAP0.822490.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.986450.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.8749
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant2.819310.058
Ripe Pepper/Ripe Tomato0.834711
Mature Eggplant/Ripe Tomato0.150910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.54467
1-1-2/M820.956561
12-2/M820.696650.639
12-4/M821.020721
1-3/M821.817161
2-1-1/M821.739280.457
2-1/M821.264551
2-6/M821.59704
3-2/M821.14278
4-1-1/M821.562480.977
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M823.727730.268
5-3/M820.81130.642
6-2/M822.094141
6-3/M821.499641
7-1/M82N/AN/A
7-2/M821.88879
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.994581
IL2-6/WTpooled1.318350.419
IL7-5/WTpooled0.872381
IL7-3/WTpooled0.912510.418
IL12-4/WTpooled1.135790.673
IL1-4/WTpooled1.014571
WT/WTpooled1.04750.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.992361
DC3000/delta hrp 6h1.112091
DC3000/delta hrp 12h1.121731
DC3000/delta hrp 24h1.101440.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.45877
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.967061
Exp 36h1.09961
Exp 60h1.089971

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970011
Var 0h2.526390.374
Var 12h I row2-row11.24440.473
Var 12h NI row2-row10.674150.494
Var 36h I row2-row11.556930.41
Var 36h NI row2-row11.355141
Var 60h I row2-row10.99534
Var 60h NI row2-row11.503580.904
Time course 0hI-0hNI0.956810.906
Time course 12hI-12hNI0.876260.476
Time course 36hI-36hNI0.887570.418
Time course 60hI-60hNI2.768120.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.170260.283
transgenic ySAMdc/azygous control (breaker)0.880430.251
transgenic ySAMdc/azygous control (red)1.12490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.061490.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.71970.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.976521
Manapal/WT (break)0.947781
Manapal/WT (red)0.921870.607