Expression of 1-1-1.4.19.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10296 | 0.863 |
27DAP/17DAP | 1.34139 | 0.725 |
39DAP/27DAP | 0.64257 | 0.529 |
41DAP/39DAP | 1.22633 | 0.728 |
42DAP/41DAP | 1.04835 | 0.999 |
43DAP/42DAP | 1.04989 | 1 |
47DAP/43DAP | 1.34036 | 0.659 |
52DAP/47DAP | 1.37487 | 0.613 |
57DAP/52DAP | 0.98416 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73734 | 0.024 |
17DAP/reference | 1.05208 | 0.399 |
27DAP/reference | 1.22333 | 0.044 |
39DAP/reference | 1.08019 | 0.229 |
41DAP/reference | 1.03036 | 0.759 |
42DAP/reference | 1.13169 | 0.003 |
43DAP/reference | 1.2322 | 0.025 |
47DAP/reference | 1.39694 | 0.001 |
52DAP/reference | 1.19528 | 0.096 |
57DAP/reference | 1.09762 | 0.31 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96231 | 0.644 |
27DAP/17DAP | 0.95832 | 0.821 |
39DAP/27DAP | 1.19832 | 0.565 |
41DAP/39DAP | 1.1187 | 0.79 |
42DAP/41DAP | 1.09143 | 0.999 |
43DAP/42DAP | 0.76088 | 0.127 |
47DAP/43DAP | 1.16474 | 0.708 |
52DAP/47DAP | 0.97243 | 0.899 |
57DAP/52DAP | 0.77927 | 0.282 |
57DAP/7DAP | 1.79402 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86978 | 0.122 |
17DAP/reference | 0.857 | 0.124 |
27DAP/reference | 0.78797 | 0.016 |
39DAP/reference | 0.92345 | 0.264 |
41DAP/reference | 0.88152 | 0.184 |
42DAP/reference | 0.74674 | 0.038 |
43DAP/reference | 0.83771 | 0.033 |
47DAP/reference | 1.24228 | 0.48 |
52DAP/reference | 0.95703 | 0.398 |
57DAP/reference | 0.87531 | 0.025 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86321 | 0.176 |
17DAP/reference | 1.01015 | 1 |
27DAP/reference | 0.99602 | 0.711 |
39DAP/reference | 1.19091 | 0.052 |
41DAP/reference | 1.18271 | 0.062 |
42DAP/reference | 1.01339 | 1 |
43DAP/reference | 0.99558 | 0.736 |
47DAP/reference | 1.03734 | 0.639 |
52DAP/reference | 1.21605 | 0.036 |
57DAP/reference | 1.04363 | 0.807 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93052 | 0.23 |
17DAP/reference | 0.92918 | 0.381 |
27DAP/reference | 0.87059 | 0.092 |
39DAP/reference | 0.98075 | 0.643 |
41DAP/reference | 0.84878 | 0.019 |
42DAP/reference | 0.75368 | 0.032 |
43DAP/reference | 0.97644 | 0.59 |
47DAP/reference | 1.47247 | 0.006 |
52DAP/reference | 1.23412 | 0.714 |
57DAP/reference | 1.41419 | 0.04 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93527 | 1 |
26DAP/20DAP | 1.11582 | 1 |
34DAP/26DAP | 1.3563 | 0.819 |
51DAP/34DAP | 0.75912 | 0.292 |
52DAP/51DAP | 0.99661 | 1 |
53DAP/52DAP | 0.99655 | 0.897 |
55DAP/53DAP | 0.99555 | 0.908 |
57DAP/55DAP | 0.95836 | 0.819 |
62DAP/57DAP | 1.07143 | 1 |
68DAP/62DAP | 1.38619 | 0.316 |
68DAP/14DAP | 1.08575 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.69962 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.54037 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.09773 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.51313 | |
Mature Eggplant/Ripe Tomato | 2.54733 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87157 | 0.736 |
1-1-2/M82 | 1.06901 | 1 |
12-2/M82 | 1.08154 | 1 |
12-4/M82 | 0.79979 | 0.619 |
1-3/M82 | 0.85659 | 1 |
2-1-1/M82 | 1.40492 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.13884 | 0.505 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.10385 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.01976 | |
4-3/M82 | 0.88642 | 0.611 |
5-3/M82 | 0.84865 | 0.642 |
6-2/M82 | 0.87437 | |
6-3/M82 | 1.33076 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.04855 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.90708 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.71332 | 0.31 |
IL12-4/WTpooled | 0.95537 | 1 |
IL1-4/WTpooled | 1.20188 | |
WT/WTpooled | 0.94003 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09347 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01329 | 1 |
DC3000/delta hrp 6h | 1.21129 | 1 |
DC3000/delta hrp 12h | 1.07013 | 1 |
DC3000/delta hrp 24h | 2.02723 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.98354 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07332 | 1 |
Exp 36h | 1.54472 | 0.693 |
Exp 60h | 1.1552 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.029 | |
Var 0h | 1.08946 | 1 |
Var 12h I row2-row1 | 1.08598 | 0.544 |
Var 12h NI row2-row1 | 0.98831 | 0.906 |
Var 36h I row2-row1 | 0.85472 | 1 |
Var 36h NI row2-row1 | 16.2733 | 1 |
Var 60h I row2-row1 | 0.77769 | 0.285 |
Var 60h NI row2-row1 | 1.10131 | 1 |
Time course 0hI-0hNI | 1.14952 | 0.537 |
Time course 12hI-12hNI | 1.16111 | 0.347 |
Time course 36hI-36hNI | 1.37107 | 0.07 |
Time course 60hI-60hNI | 2.89061 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 33.1178 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.12504 | 1 |
transgenic ySAMdc/azygous control (red) | 0.87584 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.23042 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.59451 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.57385 | 0.183 |
Manapal/WT (red) | 1.42281 | 0.222 |
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