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Expression of 1-1-1.4.19.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.102960.863
27DAP/17DAP1.341390.725
39DAP/27DAP0.642570.529
41DAP/39DAP1.226330.728
42DAP/41DAP1.048350.999
43DAP/42DAP1.049891
47DAP/43DAP1.340360.659
52DAP/47DAP1.374870.613
57DAP/52DAP0.984160.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.737340.024
17DAP/reference1.052080.399
27DAP/reference1.223330.044
39DAP/reference1.080190.229
41DAP/reference1.030360.759
42DAP/reference1.131690.003
43DAP/reference1.23220.025
47DAP/reference1.396940.001
52DAP/reference1.195280.096
57DAP/reference1.097620.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962310.644
27DAP/17DAP0.958320.821
39DAP/27DAP1.198320.565
41DAP/39DAP1.11870.79
42DAP/41DAP1.091430.999
43DAP/42DAP0.760880.127
47DAP/43DAP1.164740.708
52DAP/47DAP0.972430.899
57DAP/52DAP0.779270.282
57DAP/7DAP1.794021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.869780.122
17DAP/reference0.8570.124
27DAP/reference0.787970.016
39DAP/reference0.923450.264
41DAP/reference0.881520.184
42DAP/reference0.746740.038
43DAP/reference0.837710.033
47DAP/reference1.242280.48
52DAP/reference0.957030.398
57DAP/reference0.875310.025

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.863210.176
17DAP/reference1.010151
27DAP/reference0.996020.711
39DAP/reference1.190910.052
41DAP/reference1.182710.062
42DAP/reference1.013391
43DAP/reference0.995580.736
47DAP/reference1.037340.639
52DAP/reference1.216050.036
57DAP/reference1.043630.807

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.930520.23
17DAP/reference0.929180.381
27DAP/reference0.870590.092
39DAP/reference0.980750.643
41DAP/reference0.848780.019
42DAP/reference0.753680.032
43DAP/reference0.976440.59
47DAP/reference1.472470.006
52DAP/reference1.234120.714
57DAP/reference1.414190.04

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.935271
26DAP/20DAP1.115821
34DAP/26DAP1.35630.819
51DAP/34DAP0.759120.292
52DAP/51DAP0.996611
53DAP/52DAP0.996550.897
55DAP/53DAP0.995550.908
57DAP/55DAP0.958360.819
62DAP/57DAP1.071431
68DAP/62DAP1.386190.316
68DAP/14DAP1.085750.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.699620.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.54037N/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant2.097730.05
Ripe Pepper/Ripe Tomato1.51313N/A
Mature Eggplant/Ripe Tomato2.547330.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.871570.736
1-1-2/M821.069011
12-2/M821.081541
12-4/M820.799790.619
1-3/M820.856591
2-1-1/M821.40492N/A
2-1/M82N/AN/A
2-6/M821.138840.505
3-2/M82N/AN/A
4-1-1/M821.103851
4-1/M82N/AN/A
4-3-2/M821.01976N/A
4-3/M820.886420.611
5-3/M820.848650.642
6-2/M820.87437N/A
6-3/M821.330761
7-1/M82N/AN/A
7-2/M821.048551
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.907081
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.713320.31
IL12-4/WTpooled0.955371
IL1-4/WTpooled1.20188N/A
WT/WTpooled0.940031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.093471

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013291
DC3000/delta hrp 6h1.211291
DC3000/delta hrp 12h1.070131
DC3000/delta hrp 24h2.027230.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.98354N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.073321
Exp 36h1.544720.693
Exp 60h1.15521

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.029N/A
Var 0h1.089461
Var 12h I row2-row11.085980.544
Var 12h NI row2-row10.988310.906
Var 36h I row2-row10.854721
Var 36h NI row2-row116.27331
Var 60h I row2-row10.777690.285
Var 60h NI row2-row11.101311
Time course 0hI-0hNI1.149520.537
Time course 12hI-12hNI1.161110.347
Time course 36hI-36hNI1.371070.07
Time course 60hI-60hNI2.890610.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)33.11780.212
transgenic ySAMdc/azygous control (breaker)1.125041
transgenic ySAMdc/azygous control (red)0.875841

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.230420.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.594510.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.573850.183
Manapal/WT (red)1.422810.222