Expression of 1-1-1.4.19.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.16738 | 0.219 |
27DAP/17DAP | 1.50421 | 0.845 |
39DAP/27DAP | 1.10733 | 0.798 |
41DAP/39DAP | 1.055 | 0.925 |
42DAP/41DAP | 2.04726 | 0.644 |
43DAP/42DAP | 1.35325 | 1 |
47DAP/43DAP | 1.54999 | 0.776 |
52DAP/47DAP | 0.68831 | 0.421 |
57DAP/52DAP | 1.56108 | 0.827 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00364 | 0.787 |
17DAP/reference | 0.91479 | 0.503 |
27DAP/reference | 1.18788 | 0.023 |
39DAP/reference | 1.5229 | 0.01 |
41DAP/reference | 1.22649 | 0.007 |
42DAP/reference | 1.02137 | 0.547 |
43DAP/reference | 0.57271 | 0.019 |
47DAP/reference | 1.1135 | 0.524 |
52DAP/reference | 0.82098 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 1.12805 | |
39DAP/27DAP | 1.31597 | 0.575 |
41DAP/39DAP | 1.1995 | 0.807 |
42DAP/41DAP | 0.70354 | 0.208 |
43DAP/42DAP | 1.27107 | 0.585 |
47DAP/43DAP | 1.58056 | 0.765 |
52DAP/47DAP | 0.59939 | |
57DAP/52DAP | 1.36755 | 0.5 |
57DAP/7DAP | 1.16231 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52 | 0.035 |
17DAP/reference | 2.1226 | 0.006 |
27DAP/reference | 1.77564 | 0.006 |
39DAP/reference | 1.99721 | 0.005 |
41DAP/reference | 1.81497 | 0.01 |
42DAP/reference | 2.29943 | 0.008 |
43DAP/reference | 2.54312 | 0.007 |
47DAP/reference | 1.6399 | 0.033 |
52DAP/reference | 1.73827 | 0.008 |
57DAP/reference | 1.68805 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81741 | 0.329 |
17DAP/reference | 0.92099 | 0.523 |
27DAP/reference | 0.70912 | |
39DAP/reference | 1.33301 | 0.377 |
41DAP/reference | 0.8581 | |
42DAP/reference | 0.40666 | |
43DAP/reference | 0.53986 | 0.005 |
47DAP/reference | 1.55571 | |
52DAP/reference | 1.21309 | 0.038 |
57DAP/reference | 0.84906 | 0.125 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.62369 | 0.023 |
17DAP/reference | 1.32163 | 0.488 |
27DAP/reference | 2.03578 | 0.045 |
39DAP/reference | 1.66104 | 0.084 |
41DAP/reference | 1.79346 | 0.009 |
42DAP/reference | 1.95086 | 0.006 |
43DAP/reference | 1.82761 | 0.007 |
47DAP/reference | 1.04088 | 0.966 |
52DAP/reference | 1.68419 | 0.115 |
57DAP/reference | 2.14827 | 0.062 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02119 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.04842 | |
51DAP/34DAP | 0.84651 | |
52DAP/51DAP | 2.11783 | 0.246 |
53DAP/52DAP | 1.09235 | 0.951 |
55DAP/53DAP | 1.3573 | 0.071 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 2.77921 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.71202 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81999 | 0.321 |
IL2-6/WTpooled | 0.92415 | 1 |
IL7-5/WTpooled | 0.92584 | 0.559 |
IL7-3/WTpooled | 0.86921 | 0.418 |
IL12-4/WTpooled | 1.17024 | 0.538 |
IL1-4/WTpooled | 0.86348 | |
WT/WTpooled | 1.18163 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.92002 | 0.95 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.72325 | 0.332 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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