Expression of 1-1-1.4.19.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.167380.219
27DAP/17DAP1.504210.845
39DAP/27DAP1.107330.798
41DAP/39DAP1.0550.925
42DAP/41DAP2.047260.644
43DAP/42DAP1.353251
47DAP/43DAP1.549990.776
52DAP/47DAP0.688310.421
57DAP/52DAP1.561080.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.003640.787
17DAP/reference0.914790.503
27DAP/reference1.187880.023
39DAP/reference1.52290.01
41DAP/reference1.226490.007
42DAP/reference1.021370.547
43DAP/reference0.572710.019
47DAP/reference1.11350.524
52DAP/reference0.82098
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.12805
39DAP/27DAP1.315970.575
41DAP/39DAP1.19950.807
42DAP/41DAP0.703540.208
43DAP/42DAP1.271070.585
47DAP/43DAP1.580560.765
52DAP/47DAP0.59939
57DAP/52DAP1.367550.5
57DAP/7DAP1.16231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.520.035
17DAP/reference2.12260.006
27DAP/reference1.775640.006
39DAP/reference1.997210.005
41DAP/reference1.814970.01
42DAP/reference2.299430.008
43DAP/reference2.543120.007
47DAP/reference1.63990.033
52DAP/reference1.738270.008
57DAP/reference1.688050.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.817410.329
17DAP/reference0.920990.523
27DAP/reference0.70912
39DAP/reference1.333010.377
41DAP/reference0.8581
42DAP/reference0.40666
43DAP/reference0.539860.005
47DAP/reference1.55571
52DAP/reference1.213090.038
57DAP/reference0.849060.125

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.623690.023
17DAP/reference1.321630.488
27DAP/reference2.035780.045
39DAP/reference1.661040.084
41DAP/reference1.793460.009
42DAP/reference1.950860.006
43DAP/reference1.827610.007
47DAP/reference1.040880.966
52DAP/reference1.684190.115
57DAP/reference2.148270.062

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.021191
26DAP/20DAPN/AN/A
34DAP/26DAP1.04842
51DAP/34DAP0.84651
52DAP/51DAP2.117830.246
53DAP/52DAP1.092350.951
55DAP/53DAP1.35730.071
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP2.77921

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.71202

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.819990.321
IL2-6/WTpooled0.924151
IL7-5/WTpooled0.925840.559
IL7-3/WTpooled0.869210.418
IL12-4/WTpooled1.170240.538
IL1-4/WTpooled0.86348
WT/WTpooled1.181630.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.920020.95
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.723250.332
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A