Expression of 1-1-1.4.2.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.780640.249
27DAP/17DAP5.089750.474
39DAP/27DAP0.610270.397
41DAP/39DAP0.918690.771
42DAP/41DAP1.531820.302
43DAP/42DAP1.264190.885
47DAP/43DAP0.898570.533
52DAP/47DAP1.142750.794
57DAP/52DAP1.154810.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.048180.844
17DAP/reference0.892560.12
27DAP/reference0.971760.595
39DAP/reference0.903150.184
41DAP/reference0.862610.085
42DAP/reference0.891390.017
43DAP/reference0.904440.2
47DAP/reference0.982530.473
52DAP/reference0.957830.341
57DAP/reference1.121610.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.69266
27DAP/17DAP1.378390.39
39DAP/27DAP1.09440.793
41DAP/39DAP1.719080.238
42DAP/41DAP1.162210.719
43DAP/42DAP1.194730.788
47DAP/43DAP0.87906
52DAP/47DAP1.107020.986
57DAP/52DAP0.846040.484
57DAP/7DAP0.342151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.226750.193
17DAP/reference1.337280.02
27DAP/reference1.347310.02
39DAP/reference1.469540.007
41DAP/reference1.539590.011
42DAP/reference1.46210.021
43DAP/reference1.184640.118
47DAP/reference1.080980.67
52DAP/reference1.47910.007
57DAP/reference1.567430.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998430.786
17DAP/reference0.858780.072
27DAP/reference0.993240.576
39DAP/reference1.036610.935
41DAP/reference1.108150.269
42DAP/reference0.925030.261
43DAP/reference0.773720.04
47DAP/reference0.919270.102
52DAP/reference0.898820.121
57DAP/reference0.776810.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.214330.106
17DAP/reference1.298580.572
27DAP/reference1.08840.552
39DAP/reference1.392730.014
41DAP/reference1.468330.139
42DAP/reference1.092450.433
43DAP/reference1.051910.721
47DAP/reference0.940.315
52DAP/reference1.381560.186
57DAP/reference1.145820.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.094920.966
26DAP/20DAP0.825791
34DAP/26DAP1.20018
51DAP/34DAP1.389620.115
52DAP/51DAP0.640371
53DAP/52DAP1.255420.723
55DAP/53DAP1.427440.855
57DAP/55DAP0.750790.499
62DAP/57DAP1.268930.515
68DAP/62DAP1.816130.188
68DAP/14DAP1.855810.071

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.6289

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.357820.113
Mature Green Tomato/Ripe Tomato1.25751
Immature Eggplant/Mature Eggplant0.616110.254
Ripe Pepper/Ripe Tomato1.48972
Mature Eggplant/Ripe Tomato2.37812

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.8658
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.006471
IL2-6/WTpooled1.26985
IL7-5/WTpooled1.024811
IL7-3/WTpooled1.26733
IL12-4/WTpooled1.86458
IL1-4/WTpooled1.192881
WT/WTpooled1.185291

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.202470.692
DC3000/delta hrp 6h1.048420.95
DC3000/delta hrp 12h0.937261
DC3000/delta hrp 24h1.086490.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.932561
Exp 36h1.417251
Exp 60h1.013831

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.958960.567
transgenic ySAMdc/azygous control (breaker)0.972151
transgenic ySAMdc/azygous control (red)1.186120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.046660.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.937270.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.993311
Manapal/WT (break)1.171720.381
Manapal/WT (red)N/AN/A