Expression of 1-1-1.4.2.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78064 | 0.249 |
27DAP/17DAP | 5.08975 | 0.474 |
39DAP/27DAP | 0.61027 | 0.397 |
41DAP/39DAP | 0.91869 | 0.771 |
42DAP/41DAP | 1.53182 | 0.302 |
43DAP/42DAP | 1.26419 | 0.885 |
47DAP/43DAP | 0.89857 | 0.533 |
52DAP/47DAP | 1.14275 | 0.794 |
57DAP/52DAP | 1.15481 | 0.962 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04818 | 0.844 |
17DAP/reference | 0.89256 | 0.12 |
27DAP/reference | 0.97176 | 0.595 |
39DAP/reference | 0.90315 | 0.184 |
41DAP/reference | 0.86261 | 0.085 |
42DAP/reference | 0.89139 | 0.017 |
43DAP/reference | 0.90444 | 0.2 |
47DAP/reference | 0.98253 | 0.473 |
52DAP/reference | 0.95783 | 0.341 |
57DAP/reference | 1.12161 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.69266 | |
27DAP/17DAP | 1.37839 | 0.39 |
39DAP/27DAP | 1.0944 | 0.793 |
41DAP/39DAP | 1.71908 | 0.238 |
42DAP/41DAP | 1.16221 | 0.719 |
43DAP/42DAP | 1.19473 | 0.788 |
47DAP/43DAP | 0.87906 | |
52DAP/47DAP | 1.10702 | 0.986 |
57DAP/52DAP | 0.84604 | 0.484 |
57DAP/7DAP | 0.34215 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22675 | 0.193 |
17DAP/reference | 1.33728 | 0.02 |
27DAP/reference | 1.34731 | 0.02 |
39DAP/reference | 1.46954 | 0.007 |
41DAP/reference | 1.53959 | 0.011 |
42DAP/reference | 1.4621 | 0.021 |
43DAP/reference | 1.18464 | 0.118 |
47DAP/reference | 1.08098 | 0.67 |
52DAP/reference | 1.4791 | 0.007 |
57DAP/reference | 1.56743 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99843 | 0.786 |
17DAP/reference | 0.85878 | 0.072 |
27DAP/reference | 0.99324 | 0.576 |
39DAP/reference | 1.03661 | 0.935 |
41DAP/reference | 1.10815 | 0.269 |
42DAP/reference | 0.92503 | 0.261 |
43DAP/reference | 0.77372 | 0.04 |
47DAP/reference | 0.91927 | 0.102 |
52DAP/reference | 0.89882 | 0.121 |
57DAP/reference | 0.77681 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21433 | 0.106 |
17DAP/reference | 1.29858 | 0.572 |
27DAP/reference | 1.0884 | 0.552 |
39DAP/reference | 1.39273 | 0.014 |
41DAP/reference | 1.46833 | 0.139 |
42DAP/reference | 1.09245 | 0.433 |
43DAP/reference | 1.05191 | 0.721 |
47DAP/reference | 0.94 | 0.315 |
52DAP/reference | 1.38156 | 0.186 |
57DAP/reference | 1.14582 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09492 | 0.966 |
26DAP/20DAP | 0.82579 | 1 |
34DAP/26DAP | 1.20018 | |
51DAP/34DAP | 1.38962 | 0.115 |
52DAP/51DAP | 0.64037 | 1 |
53DAP/52DAP | 1.25542 | 0.723 |
55DAP/53DAP | 1.42744 | 0.855 |
57DAP/55DAP | 0.75079 | 0.499 |
62DAP/57DAP | 1.26893 | 0.515 |
68DAP/62DAP | 1.81613 | 0.188 |
68DAP/14DAP | 1.85581 | 0.071 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.6289 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.35782 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.25751 | |
Immature Eggplant/Mature Eggplant | 0.61611 | 0.254 |
Ripe Pepper/Ripe Tomato | 1.48972 | |
Mature Eggplant/Ripe Tomato | 2.37812 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.8658 | |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00647 | 1 |
IL2-6/WTpooled | 1.26985 | |
IL7-5/WTpooled | 1.02481 | 1 |
IL7-3/WTpooled | 1.26733 | |
IL12-4/WTpooled | 1.86458 | |
IL1-4/WTpooled | 1.19288 | 1 |
WT/WTpooled | 1.18529 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.20247 | 0.692 |
DC3000/delta hrp 6h | 1.04842 | 0.95 |
DC3000/delta hrp 12h | 0.93726 | 1 |
DC3000/delta hrp 24h | 1.08649 | 0.655 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93256 | 1 |
Exp 36h | 1.41725 | 1 |
Exp 60h | 1.01383 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95896 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.97215 | 1 |
transgenic ySAMdc/azygous control (red) | 1.18612 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04666 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93727 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99331 | 1 |
Manapal/WT (break) | 1.17172 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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