Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.4.2.21

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.36893	0.755
27DAP/17DAP	1.12994	0.845
39DAP/27DAP	1.1459	1
41DAP/39DAP	0.86806	0.53
42DAP/41DAP	1.10191	0.938
43DAP/42DAP	1.01083	0.937
47DAP/43DAP	1.47921	0.584
52DAP/47DAP	1.01508	0.752
57DAP/52DAP	0.78485	0.772

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.21109	0.994
17DAP/reference	0.8045	0.503
27DAP/reference	0.68571
39DAP/reference	N/A	N/A
41DAP/reference	1.39081	0.021
42DAP/reference	0.84114	0.305
43DAP/reference	1.109	0.705
47DAP/reference	1.23807	0.885
52DAP/reference	0.37037
57DAP/reference	1.31349	0.876

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.26122	0.271
27DAP/17DAP	0.91153	0.919
39DAP/27DAP	1.08856	1
41DAP/39DAP	1.11306	0.247
42DAP/41DAP	1.10335	0.753
43DAP/42DAP	0.99091	0.854
47DAP/43DAP	1.01433	0.902
52DAP/47DAP	0.62148
57DAP/52DAP	1.28792	0.284
57DAP/7DAP	0.39807

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99068	0.682
17DAP/reference	1.06964	0.896
27DAP/reference	0.87481	0.109
39DAP/reference	1.03773	1
41DAP/reference	0.7921	0.04
42DAP/reference	0.76423	0.05
43DAP/reference	0.84245	0.017
47DAP/reference	0.7602	0.222
52DAP/reference	0.81083	0.033
57DAP/reference	0.86569	0.105

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98617
17DAP/reference	N/A	N/A
27DAP/reference	N/A	N/A
39DAP/reference	0.90065
41DAP/reference	N/A	N/A
42DAP/reference	N/A	N/A
43DAP/reference	0.95321	0.646
47DAP/reference	N/A	N/A
52DAP/reference	1.02047
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.1905	0.338
17DAP/reference	1.00173	1
27DAP/reference	0.73172	0.108
39DAP/reference	1.93596	0.733
41DAP/reference	0.77122	0.025
42DAP/reference	0.80079	0.22
43DAP/reference	0.97578	0.639
47DAP/reference	0.57336
52DAP/reference	0.70455	0.2
57DAP/reference	0.63408

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.77422	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.03645	1
51DAP/34DAP	1.33622	0.654
52DAP/51DAP	1.32403	1
53DAP/52DAP	1.0576	0.929
55DAP/53DAP	1.23764	1
57DAP/55DAP	N/A	N/A
62DAP/57DAP	N/A	N/A
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.87342	0.014

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	0.32045
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.87565	0.243
IL2-6/WTpooled	1.15218	0.531
IL7-5/WTpooled	0.96845	1
IL7-3/WTpooled	0.8421	0.31
IL12-4/WTpooled	0.93424	1
IL1-4/WTpooled	0.98102	1
WT/WTpooled	0.89831	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.14699	1
Manapal/WT (red)	N/A	N/A