Expression of 1-1-1.4.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78334 | 0.082 |
27DAP/17DAP | 1.11154 | 0.849 |
39DAP/27DAP | 1.33125 | 0.287 |
41DAP/39DAP | 1.10508 | 0.624 |
42DAP/41DAP | 1.02805 | 0.994 |
43DAP/42DAP | 0.96406 | 0.906 |
47DAP/43DAP | 0.78362 | 0.402 |
52DAP/47DAP | 1.30675 | 0.421 |
57DAP/52DAP | 0.82694 | 0.646 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09279 | 0.052 |
17DAP/reference | 0.98255 | 0.567 |
27DAP/reference | 0.94072 | 0.157 |
39DAP/reference | 0.97944 | 0.651 |
41DAP/reference | 0.9677 | 0.542 |
42DAP/reference | 1.05349 | 0.159 |
43DAP/reference | 1.00058 | 0.904 |
47DAP/reference | 0.91185 | 0.027 |
52DAP/reference | 0.92176 | 0.128 |
57DAP/reference | 0.87026 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95371 | 0.542 |
27DAP/17DAP | 1.01531 | 0.957 |
39DAP/27DAP | 0.94506 | 0.419 |
41DAP/39DAP | 1.05069 | 0.781 |
42DAP/41DAP | 0.95135 | 0.486 |
43DAP/42DAP | 1.08324 | 0.094 |
47DAP/43DAP | 1.00731 | 0.973 |
52DAP/47DAP | 0.98447 | 0.917 |
57DAP/52DAP | 0.95664 | 0.531 |
57DAP/7DAP | 1.2123 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25755 | 0.039 |
17DAP/reference | 1.10441 | 0.009 |
27DAP/reference | 0.99343 | 0.656 |
39DAP/reference | 1.08159 | 0.04 |
41DAP/reference | 1.08904 | 0.191 |
42DAP/reference | 1.18067 | 0.008 |
43DAP/reference | 1.31564 | 0.028 |
47DAP/reference | 1.36577 | 0.045 |
52DAP/reference | 1.18629 | 0.034 |
57DAP/reference | 1.18097 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18851 | 0.042 |
17DAP/reference | 1.10597 | 0.048 |
27DAP/reference | 1.13274 | 0.036 |
39DAP/reference | 1.0522 | 0.324 |
41DAP/reference | 1.08615 | 0.362 |
42DAP/reference | 1.00896 | 1 |
43DAP/reference | 0.95878 | 0.539 |
47DAP/reference | 0.94713 | 0.221 |
52DAP/reference | 0.97339 | 0.407 |
57DAP/reference | 0.97825 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11198 | 0.043 |
17DAP/reference | 1.09073 | 0.431 |
27DAP/reference | 1.02181 | 0.672 |
39DAP/reference | 1.06989 | 0.075 |
41DAP/reference | 0.9908 | 0.682 |
42DAP/reference | 1.25562 | 0.032 |
43DAP/reference | 1.21163 | 0.128 |
47DAP/reference | 0.97226 | 0.434 |
52DAP/reference | 0.98643 | 0.747 |
57DAP/reference | 0.83082 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0636 | 0.966 |
26DAP/20DAP | 1.02761 | 1 |
34DAP/26DAP | 0.79552 | 0.108 |
51DAP/34DAP | 1.09456 | 0.483 |
52DAP/51DAP | 0.99791 | 1 |
53DAP/52DAP | 1.24538 | 0.806 |
55DAP/53DAP | 0.92173 | 0.592 |
57DAP/55DAP | 0.94492 | 0.774 |
62DAP/57DAP | 1.33653 | 0.098 |
68DAP/62DAP | 1.07286 | 0.866 |
68DAP/14DAP | 0.98353 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02085 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94063 | 0.577 |
Mature Green Tomato/Ripe Tomato | 0.87758 | 0.347 |
Immature Eggplant/Mature Eggplant | 1.07842 | 0.334 |
Ripe Pepper/Ripe Tomato | 0.6729 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.19894 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08155 | 0.877 |
1-1-2/M82 | 0.96875 | 1 |
12-2/M82 | 1.19451 | 0.61 |
12-4/M82 | 0.93799 | 1 |
1-3/M82 | 1.15272 | 1 |
2-1-1/M82 | 0.90616 | 0.784 |
2-1/M82 | 1.10197 | 1 |
2-6/M82 | 0.96729 | |
3-2/M82 | 1.02151 | |
4-1-1/M82 | 1.07991 | 1 |
4-1/M82 | 0.93704 | 1 |
4-3-2/M82 | 1.13671 | 1 |
4-3/M82 | 1.08097 | 1 |
5-3/M82 | 1.00772 | 1 |
6-2/M82 | 1.11636 | 1 |
6-3/M82 | 0.89433 | 1 |
7-1/M82 | 1.01346 | 1 |
7-2/M82 | 1.0563 | 1 |
9-3-2/M82 | 1.10686 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.99197 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.26684 | 1 |
IL12-4/WTpooled | 1.20034 | 0.532 |
IL1-4/WTpooled | 1.05041 | |
WT/WTpooled | 0.9742 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24892 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09633 | 0.921 |
DC3000/delta hrp 6h | 1.0332 | 1 |
DC3000/delta hrp 12h | 1.18905 | 1 |
DC3000/delta hrp 24h | 1.06824 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12734 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.07406 | 0.457 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09922 | 1 |
Exp 36h | 1.22212 | 1 |
Exp 60h | 1.07207 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97142 | 1 |
Var 0h | 1.19949 | 0.782 |
Var 12h I row2-row1 | 1.13656 | 0.473 |
Var 12h NI row2-row1 | 0.9057 | 0.82 |
Var 36h I row2-row1 | 0.99244 | 1 |
Var 36h NI row2-row1 | 0.61355 | 0.378 |
Var 60h I row2-row1 | 1.05484 | 1 |
Var 60h NI row2-row1 | 1.04802 | 1 |
Time course 0hI-0hNI | 1.05363 | 0.662 |
Time course 12hI-12hNI | 1.00427 | 1 |
Time course 36hI-36hNI | 1.12847 | 0.19 |
Time course 60hI-60hNI | 1.39338 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90601 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.93389 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.98557 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05069 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79535 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96815 | 1 |
Manapal/WT (break) | 0.92232 | 1 |
Manapal/WT (red) | 0.67628 | 0.187 |
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