Expression of 1-1-1.4.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.783340.082
27DAP/17DAP1.111540.849
39DAP/27DAP1.331250.287
41DAP/39DAP1.105080.624
42DAP/41DAP1.028050.994
43DAP/42DAP0.964060.906
47DAP/43DAP0.783620.402
52DAP/47DAP1.306750.421
57DAP/52DAP0.826940.646

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.092790.052
17DAP/reference0.982550.567
27DAP/reference0.940720.157
39DAP/reference0.979440.651
41DAP/reference0.96770.542
42DAP/reference1.053490.159
43DAP/reference1.000580.904
47DAP/reference0.911850.027
52DAP/reference0.921760.128
57DAP/reference0.870260.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.953710.542
27DAP/17DAP1.015310.957
39DAP/27DAP0.945060.419
41DAP/39DAP1.050690.781
42DAP/41DAP0.951350.486
43DAP/42DAP1.083240.094
47DAP/43DAP1.007310.973
52DAP/47DAP0.984470.917
57DAP/52DAP0.956640.531
57DAP/7DAP1.21230.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.257550.039
17DAP/reference1.104410.009
27DAP/reference0.993430.656
39DAP/reference1.081590.04
41DAP/reference1.089040.191
42DAP/reference1.180670.008
43DAP/reference1.315640.028
47DAP/reference1.365770.045
52DAP/reference1.186290.034
57DAP/reference1.180970.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.188510.042
17DAP/reference1.105970.048
27DAP/reference1.132740.036
39DAP/reference1.05220.324
41DAP/reference1.086150.362
42DAP/reference1.008961
43DAP/reference0.958780.539
47DAP/reference0.947130.221
52DAP/reference0.973390.407
57DAP/reference0.978250.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.111980.043
17DAP/reference1.090730.431
27DAP/reference1.021810.672
39DAP/reference1.069890.075
41DAP/reference0.99080.682
42DAP/reference1.255620.032
43DAP/reference1.211630.128
47DAP/reference0.972260.434
52DAP/reference0.986430.747
57DAP/reference0.830820.044

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.06360.966
26DAP/20DAP1.027611
34DAP/26DAP0.795520.108
51DAP/34DAP1.094560.483
52DAP/51DAP0.997911
53DAP/52DAP1.245380.806
55DAP/53DAP0.921730.592
57DAP/55DAP0.944920.774
62DAP/57DAP1.336530.098
68DAP/62DAP1.072860.866
68DAP/14DAP0.983531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.020850.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.940630.577
Mature Green Tomato/Ripe Tomato0.877580.347
Immature Eggplant/Mature Eggplant1.078420.334
Ripe Pepper/Ripe Tomato0.67290.293
Mature Eggplant/Ripe Tomato1.198941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.081550.877
1-1-2/M820.968751
12-2/M821.194510.61
12-4/M820.937991
1-3/M821.152721
2-1-1/M820.906160.784
2-1/M821.101971
2-6/M820.96729
3-2/M821.02151
4-1-1/M821.079911
4-1/M820.937041
4-3-2/M821.136711
4-3/M821.080971
5-3/M821.007721
6-2/M821.116361
6-3/M820.894331
7-1/M821.013461
7-2/M821.05631
9-3-2/M821.106861

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.991971
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.266841
IL12-4/WTpooled1.200340.532
IL1-4/WTpooled1.05041
WT/WTpooled0.97421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.248920.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.096330.921
DC3000/delta hrp 6h1.03321
DC3000/delta hrp 12h1.189051
DC3000/delta hrp 24h1.068240.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.127340.06
DC3000 delta B/DC3000 delta AB1.074060.457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.099221
Exp 36h1.222121
Exp 60h1.072071

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.971421
Var 0h1.199490.782
Var 12h I row2-row11.136560.473
Var 12h NI row2-row10.90570.82
Var 36h I row2-row10.992441
Var 36h NI row2-row10.613550.378
Var 60h I row2-row11.054841
Var 60h NI row2-row11.048021
Time course 0hI-0hNI1.053630.662
Time course 12hI-12hNI1.004271
Time course 36hI-36hNI1.128470.19
Time course 60hI-60hNI1.393380.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.906010.286
transgenic ySAMdc/azygous control (breaker)0.933890.49
transgenic ySAMdc/azygous control (red)0.985571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.050690.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.795350.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.968151
Manapal/WT (break)0.922321
Manapal/WT (red)0.676280.187