Expression of 1-1-1.4.20.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.266880.827
27DAP/17DAP1.924290.322
39DAP/27DAP1.095030.99
41DAP/39DAP1.213740.516
42DAP/41DAP1.016051
43DAP/42DAP1.258780.885
47DAP/43DAP1.053620.769
52DAP/47DAP0.685330.225
57DAP/52DAP1.10770.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.971440.526
17DAP/reference1.04250.675
27DAP/reference0.981310.694
39DAP/reference0.986720.816
41DAP/reference0.931020.154
42DAP/reference0.833710.017
43DAP/reference0.947790.448
47DAP/reference0.847510.003
52DAP/reference0.933630.258
57DAP/reference0.969090.456

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.853530.323
27DAP/17DAP1.039760.909
39DAP/27DAP0.993851
41DAP/39DAP1.002891
42DAP/41DAP1.153340.74
43DAP/42DAP0.988140.902
47DAP/43DAP1.02671
52DAP/47DAP0.913530.309
57DAP/52DAP1.106990.759
57DAP/7DAP1.196621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.874510.074
17DAP/reference0.869070.013
27DAP/reference0.980760.53
39DAP/reference0.815850.095
41DAP/reference0.833980.082
42DAP/reference0.738240.013
43DAP/reference0.890880.202
47DAP/reference0.952840.504
52DAP/reference0.968280.435
57DAP/reference0.857120.039

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972360.655
17DAP/reference0.782810.023
27DAP/reference0.914690.24
39DAP/reference0.869930.079
41DAP/reference0.856480.13
42DAP/reference0.69840.035
43DAP/reference1.069580.997
47DAP/reference0.916350.221
52DAP/reference0.824370.055
57DAP/reference0.858770.073

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.73340.032
17DAP/reference0.86360.136
27DAP/reference0.898580.133
39DAP/reference0.874390.023
41DAP/reference0.946130.417
42DAP/reference1.004971
43DAP/reference0.905680.416
47DAP/reference0.87830.145
52DAP/reference0.931730.505
57DAP/reference0.978030.633

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.065151
26DAP/20DAP1.033761
34DAP/26DAP1.106441
51DAP/34DAP0.897990.611
52DAP/51DAP0.96611
53DAP/52DAP0.838570.301
55DAP/53DAP1.163470.645
57DAP/55DAP1.017821
62DAP/57DAP0.916770.681
68DAP/62DAP1.34380.336
68DAP/14DAP1.193981

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.843920.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.582980.106
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.57316
Mature Eggplant/Ripe Tomato1.410081

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.99891
12-2/M82N/AN/A
12-4/M821.267671
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.743990.549
4-1-1/M82N/AN/A
4-1/M821.692460.512
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.00717
7-2/M820.45748
9-3-2/M820.973241

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.317780.277
IL2-6/WTpooled0.666520.473
IL7-5/WTpooled0.958421
IL7-3/WTpooled1.576310.362
IL12-4/WTpooled1.02081
IL1-4/WTpooled1.15791
WT/WTpooled0.940121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.95587

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.732191
DC3000/delta hrp 6h1.063921
DC3000/delta hrp 12h0.826171
DC3000/delta hrp 24h1.08420.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.005271
Exp 36h1.910641
Exp 60h1.094721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.20045
Var 0hN/AN/A
Var 12h I row2-row16.381480.544
Var 12h NI row2-row12.12251
Var 36h I row2-row10.998321
Var 36h NI row2-row10.970760.584
Var 60h I row2-row11.008791
Var 60h NI row2-row10.624780.866
Time course 0hI-0hNI1.052050.867
Time course 12hI-12hNI1.131910.779
Time course 36hI-36hNI1.069020.799
Time course 60hI-60hNI1.519240.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.326850.36
transgenic ySAMdc/azygous control (breaker)0.981210.49
transgenic ySAMdc/azygous control (red)1.13220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.920930.053

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.979120.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.18420.307
Manapal/WT (break)1.089671
Manapal/WT (red)1.053451