Expression of 1-1-1.4.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93703 | 0.652 |
27DAP/17DAP | 1.30559 | 0.677 |
39DAP/27DAP | 0.87264 | 0.522 |
41DAP/39DAP | 0.9846 | 0.873 |
42DAP/41DAP | 1.08104 | 0.978 |
43DAP/42DAP | 1.05158 | 1 |
47DAP/43DAP | 1.18717 | 0.618 |
52DAP/47DAP | 0.80483 | 0.517 |
57DAP/52DAP | 1.08893 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.55437 | 0.036 |
17DAP/reference | 1.81057 | 0.012 |
27DAP/reference | 1.46074 | 0.022 |
39DAP/reference | 1.46007 | 0.203 |
41DAP/reference | 2.34988 | 0.012 |
42DAP/reference | 3.65107 | 0.191 |
43DAP/reference | 1.29094 | 0.403 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.18458 | 0.158 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86701 | 0.442 |
27DAP/17DAP | 0.98901 | 0.943 |
39DAP/27DAP | 1.07635 | 0.615 |
41DAP/39DAP | 0.94329 | 0.875 |
42DAP/41DAP | 1.01595 | 1 |
43DAP/42DAP | 1.02891 | 1 |
47DAP/43DAP | 0.98669 | 0.928 |
52DAP/47DAP | 1.05379 | 0.823 |
57DAP/52DAP | 0.96902 | 0.7 |
57DAP/7DAP | 0.98542 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18181 | 0.06 |
17DAP/reference | 1.25283 | 0.361 |
27DAP/reference | 0.99478 | 0.656 |
39DAP/reference | 0.90642 | 0.083 |
41DAP/reference | 1.02404 | 1 |
42DAP/reference | 0.84631 | 0.038 |
43DAP/reference | 0.79074 | 0.032 |
47DAP/reference | 1.17034 | 0.901 |
52DAP/reference | 0.73411 | 0.012 |
57DAP/reference | 0.73638 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15482 | 0.55 |
17DAP/reference | 1.41945 | 0.049 |
27DAP/reference | 1.35903 | 0.192 |
39DAP/reference | 1.43856 | 0.016 |
41DAP/reference | 1.0545 | 1 |
42DAP/reference | 1.51396 | |
43DAP/reference | 1.29332 | 0.582 |
47DAP/reference | 1.32284 | 0.008 |
52DAP/reference | 1.37525 | 0.006 |
57DAP/reference | 1.51993 | 0.054 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52609 | 0.019 |
17DAP/reference | 1.24595 | 0.112 |
27DAP/reference | 1.1501 | 0.325 |
39DAP/reference | 0.98773 | 0.591 |
41DAP/reference | 1.0148 | 1 |
42DAP/reference | 1.00264 | 0.671 |
43DAP/reference | 1.1393 | 0.531 |
47DAP/reference | 1.42926 | 0.073 |
52DAP/reference | 0.74781 | 0.155 |
57DAP/reference | 2.0571 | 0.279 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04218 | 0.966 |
26DAP/20DAP | 0.89144 | 0.512 |
34DAP/26DAP | 1.23925 | 0.819 |
51DAP/34DAP | 1.01755 | 0.949 |
52DAP/51DAP | 1.17145 | 0.207 |
53DAP/52DAP | 0.99182 | 0.978 |
55DAP/53DAP | 1.10665 | 0.368 |
57DAP/55DAP | 1.00249 | 0.935 |
62DAP/57DAP | 0.86392 | 0.681 |
68DAP/62DAP | 0.8515 | 0.668 |
68DAP/14DAP | 0.77035 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.67321 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.00156 | 0.835 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 11.5674 | |
Mature Eggplant/Ripe Tomato | 4.40409 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.43292 | |
1-1-2/M82 | 1.03239 | 1 |
12-2/M82 | 0.85168 | 0.955 |
12-4/M82 | 0.46467 | 0.33 |
1-3/M82 | 5.40454 | 0.479 |
2-1-1/M82 | 1.78066 | |
2-1/M82 | 1.96127 | |
2-6/M82 | 2.02234 | 0.395 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 2.62905 | 1 |
4-1/M82 | 0.9167 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.34881 | 1 |
5-3/M82 | 1.41267 | 1 |
6-2/M82 | 2.841 | 0.253 |
6-3/M82 | 0.26713 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 3.63276 | |
9-3-2/M82 | 1.06074 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81824 | 0.321 |
IL2-6/WTpooled | 0.82227 | |
IL7-5/WTpooled | 0.64391 | 1 |
IL7-3/WTpooled | 0.70046 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.93363 | 0.834 |
WT/WTpooled | 1.41373 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.35824 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0651 | 0.921 |
DC3000/delta hrp 6h | 0.70495 | |
DC3000/delta hrp 12h | 1.02346 | 1 |
DC3000/delta hrp 24h | 0.59094 | 0.074 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08033 | 1 |
DC3000 delta B/DC3000 delta AB | 0.88653 | 0.125 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96873 | 1 |
Var 0h | 0.96394 | 1 |
Var 12h I row2-row1 | 0.84334 | 0.357 |
Var 12h NI row2-row1 | 0.92754 | 0.82 |
Var 36h I row2-row1 | 0.89048 | 0.575 |
Var 36h NI row2-row1 | 0.9168 | 0.743 |
Var 60h I row2-row1 | 1.04555 | 1 |
Var 60h NI row2-row1 | 1.13035 | 0.904 |
Time course 0hI-0hNI | 0.98259 | 0.95 |
Time course 12hI-12hNI | 0.97016 | 0.725 |
Time course 36hI-36hNI | 0.86234 | 0.04 |
Time course 60hI-60hNI | 0.56241 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91513 | 0.201 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.10283 | 1 |
Manapal/WT (red) | 4.07297 | 0.164 |
|
|