Expression of 1-1-1.4.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.937030.652
27DAP/17DAP1.305590.677
39DAP/27DAP0.872640.522
41DAP/39DAP0.98460.873
42DAP/41DAP1.081040.978
43DAP/42DAP1.051581
47DAP/43DAP1.187170.618
52DAP/47DAP0.804830.517
57DAP/52DAP1.088930.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.554370.036
17DAP/reference1.810570.012
27DAP/reference1.460740.022
39DAP/reference1.460070.203
41DAP/reference2.349880.012
42DAP/reference3.651070.191
43DAP/reference1.290940.403
47DAP/referenceN/AN/A
52DAP/reference1.184580.158
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.867010.442
27DAP/17DAP0.989010.943
39DAP/27DAP1.076350.615
41DAP/39DAP0.943290.875
42DAP/41DAP1.015951
43DAP/42DAP1.028911
47DAP/43DAP0.986690.928
52DAP/47DAP1.053790.823
57DAP/52DAP0.969020.7
57DAP/7DAP0.985421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.181810.06
17DAP/reference1.252830.361
27DAP/reference0.994780.656
39DAP/reference0.906420.083
41DAP/reference1.024041
42DAP/reference0.846310.038
43DAP/reference0.790740.032
47DAP/reference1.170340.901
52DAP/reference0.734110.012
57DAP/reference0.736380.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.154820.55
17DAP/reference1.419450.049
27DAP/reference1.359030.192
39DAP/reference1.438560.016
41DAP/reference1.05451
42DAP/reference1.51396
43DAP/reference1.293320.582
47DAP/reference1.322840.008
52DAP/reference1.375250.006
57DAP/reference1.519930.054

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.526090.019
17DAP/reference1.245950.112
27DAP/reference1.15010.325
39DAP/reference0.987730.591
41DAP/reference1.01481
42DAP/reference1.002640.671
43DAP/reference1.13930.531
47DAP/reference1.429260.073
52DAP/reference0.747810.155
57DAP/reference2.05710.279

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042180.966
26DAP/20DAP0.891440.512
34DAP/26DAP1.239250.819
51DAP/34DAP1.017550.949
52DAP/51DAP1.171450.207
53DAP/52DAP0.991820.978
55DAP/53DAP1.106650.368
57DAP/55DAP1.002490.935
62DAP/57DAP0.863920.681
68DAP/62DAP0.85150.668
68DAP/14DAP0.770351

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.673210.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.001560.835
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato11.5674
Mature Eggplant/Ripe Tomato4.404091

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.43292
1-1-2/M821.032391
12-2/M820.851680.955
12-4/M820.464670.33
1-3/M825.404540.479
2-1-1/M821.78066
2-1/M821.96127
2-6/M822.022340.395
3-2/M82N/AN/A
4-1-1/M822.629051
4-1/M820.9167
4-3-2/M82N/AN/A
4-3/M822.348811
5-3/M821.412671
6-2/M822.8410.253
6-3/M820.26713
7-1/M82N/AN/A
7-2/M823.63276
9-3-2/M821.06074

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.818240.321
IL2-6/WTpooled0.82227
IL7-5/WTpooled0.643911
IL7-3/WTpooled0.70046
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.933630.834
WT/WTpooled1.413731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.358240.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.06510.921
DC3000/delta hrp 6h0.70495
DC3000/delta hrp 12h1.023461
DC3000/delta hrp 24h0.590940.074

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.080331
DC3000 delta B/DC3000 delta AB0.886530.125

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968731
Var 0h0.963941
Var 12h I row2-row10.843340.357
Var 12h NI row2-row10.927540.82
Var 36h I row2-row10.890480.575
Var 36h NI row2-row10.91680.743
Var 60h I row2-row11.045551
Var 60h NI row2-row11.130350.904
Time course 0hI-0hNI0.982590.95
Time course 12hI-12hNI0.970160.725
Time course 36hI-36hNI0.862340.04
Time course 60hI-60hNI0.562410.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.915130.201

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.102831
Manapal/WT (red)4.072970.164