Expression of 1-1-1.4.3.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.881080.617
27DAP/17DAP0.831450.697
39DAP/27DAP1.595920.476
41DAP/39DAP1.01520.992
42DAP/41DAP1.02590.986
43DAP/42DAP1.274631
47DAP/43DAP1.042040.999
52DAP/47DAP1.012590.957
57DAP/52DAP1.044870.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.775250.025
17DAP/reference0.913690.138
27DAP/reference0.906570.327
39DAP/reference0.890640.076
41DAP/reference0.678420.008
42DAP/reference0.831140.002
43DAP/reference1.001420.904
47DAP/reference0.948350.242
52DAP/reference0.978170.515
57DAP/reference1.216970.024

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.358950.161
27DAP/17DAP0.949670.887
39DAP/27DAP0.970840.844
41DAP/39DAP1.271350.417
42DAP/41DAP0.858460.174
43DAP/42DAP1.182330.176
47DAP/43DAP0.999050.989
52DAP/47DAP1.247280.367
57DAP/52DAP1.157130.558
57DAP/7DAP0.933961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.117640.435
17DAP/reference0.97180.447
27DAP/reference1.06340.453
39DAP/reference1.105820.166
41DAP/reference1.069850.389
42DAP/reference0.94790.289
43DAP/reference0.930380.23
47DAP/reference0.968430.504
52DAP/reference1.029681
57DAP/reference1.0320.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992790.77
17DAP/reference0.751240.008
27DAP/reference0.761980.017
39DAP/reference1.038621
41DAP/reference1.030391
42DAP/reference0.912410.135
43DAP/reference0.799520.062
47DAP/reference0.911850.184
52DAP/reference0.931670.171
57DAP/reference0.879850.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.111520.588
17DAP/reference0.893350.398
27DAP/reference0.984970.657
39DAP/reference0.885690.046
41DAP/reference1.144340.239
42DAP/reference0.994290.816
43DAP/reference1.077260.531
47DAP/reference0.898910.072
52DAP/reference0.912790.319
57DAP/reference1.200850.079

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.345290.752
26DAP/20DAP1.125610.567
34DAP/26DAP0.817990.565
51DAP/34DAP1.202050.387
52DAP/51DAP1.050271
53DAP/52DAP1.22890.187
55DAP/53DAP1.044670.991
57DAP/55DAP0.91120.647
62DAP/57DAP0.832060.871
68DAP/62DAP1.617530.626
68DAP/14DAP3.502620.04

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.302980.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.559540.898
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.15
Mature Eggplant/Ripe Tomato1.01094

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.04257
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.059371
IL2-6/WTpooled1.194550.419
IL7-5/WTpooled1.55060.75
IL7-3/WTpooled1.093010.362
IL12-4/WTpooled1.111320.839
IL1-4/WTpooled0.940610.699
WT/WTpooled0.977711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.837320.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.026880.921
DC3000/delta hrp 6h1.096241
DC3000/delta hrp 12h0.891311
DC3000/delta hrp 24h0.96660.794

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.481630.034
DC3000 delta B/DC3000 delta AB0.956870.674

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.713041
Exp 36h1.350891
Exp 60h0.962610.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009341
Var 0h1.080370.936
Var 12h I row2-row10.770820.344
Var 12h NI row2-row10.914890.82
Var 36h I row2-row10.950941
Var 36h NI row2-row10.947821
Var 60h I row2-row11.053241
Var 60h NI row2-row11.179640.904
Time course 0hI-0hNI0.912490.352
Time course 12hI-12hNI0.985730.935
Time course 36hI-36hNI0.850540.03
Time course 60hI-60hNI0.302520.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.097240.36
transgenic ySAMdc/azygous control (breaker)1.14880.248
transgenic ySAMdc/azygous control (red)0.972331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.085570.054

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.061191

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.151340.096
Manapal/WT (break)1.084161
Manapal/WT (red)1.048021