Expression of 1-1-1.4.3.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88108 | 0.617 |
27DAP/17DAP | 0.83145 | 0.697 |
39DAP/27DAP | 1.59592 | 0.476 |
41DAP/39DAP | 1.0152 | 0.992 |
42DAP/41DAP | 1.0259 | 0.986 |
43DAP/42DAP | 1.27463 | 1 |
47DAP/43DAP | 1.04204 | 0.999 |
52DAP/47DAP | 1.01259 | 0.957 |
57DAP/52DAP | 1.04487 | 0.985 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77525 | 0.025 |
17DAP/reference | 0.91369 | 0.138 |
27DAP/reference | 0.90657 | 0.327 |
39DAP/reference | 0.89064 | 0.076 |
41DAP/reference | 0.67842 | 0.008 |
42DAP/reference | 0.83114 | 0.002 |
43DAP/reference | 1.00142 | 0.904 |
47DAP/reference | 0.94835 | 0.242 |
52DAP/reference | 0.97817 | 0.515 |
57DAP/reference | 1.21697 | 0.024 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35895 | 0.161 |
27DAP/17DAP | 0.94967 | 0.887 |
39DAP/27DAP | 0.97084 | 0.844 |
41DAP/39DAP | 1.27135 | 0.417 |
42DAP/41DAP | 0.85846 | 0.174 |
43DAP/42DAP | 1.18233 | 0.176 |
47DAP/43DAP | 0.99905 | 0.989 |
52DAP/47DAP | 1.24728 | 0.367 |
57DAP/52DAP | 1.15713 | 0.558 |
57DAP/7DAP | 0.93396 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11764 | 0.435 |
17DAP/reference | 0.9718 | 0.447 |
27DAP/reference | 1.0634 | 0.453 |
39DAP/reference | 1.10582 | 0.166 |
41DAP/reference | 1.06985 | 0.389 |
42DAP/reference | 0.9479 | 0.289 |
43DAP/reference | 0.93038 | 0.23 |
47DAP/reference | 0.96843 | 0.504 |
52DAP/reference | 1.02968 | 1 |
57DAP/reference | 1.032 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99279 | 0.77 |
17DAP/reference | 0.75124 | 0.008 |
27DAP/reference | 0.76198 | 0.017 |
39DAP/reference | 1.03862 | 1 |
41DAP/reference | 1.03039 | 1 |
42DAP/reference | 0.91241 | 0.135 |
43DAP/reference | 0.79952 | 0.062 |
47DAP/reference | 0.91185 | 0.184 |
52DAP/reference | 0.93167 | 0.171 |
57DAP/reference | 0.87985 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11152 | 0.588 |
17DAP/reference | 0.89335 | 0.398 |
27DAP/reference | 0.98497 | 0.657 |
39DAP/reference | 0.88569 | 0.046 |
41DAP/reference | 1.14434 | 0.239 |
42DAP/reference | 0.99429 | 0.816 |
43DAP/reference | 1.07726 | 0.531 |
47DAP/reference | 0.89891 | 0.072 |
52DAP/reference | 0.91279 | 0.319 |
57DAP/reference | 1.20085 | 0.079 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.34529 | 0.752 |
26DAP/20DAP | 1.12561 | 0.567 |
34DAP/26DAP | 0.81799 | 0.565 |
51DAP/34DAP | 1.20205 | 0.387 |
52DAP/51DAP | 1.05027 | 1 |
53DAP/52DAP | 1.2289 | 0.187 |
55DAP/53DAP | 1.04467 | 0.991 |
57DAP/55DAP | 0.9112 | 0.647 |
62DAP/57DAP | 0.83206 | 0.871 |
68DAP/62DAP | 1.61753 | 0.626 |
68DAP/14DAP | 3.50262 | 0.04 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.30298 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.55954 | 0.898 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.15 | |
Mature Eggplant/Ripe Tomato | 1.01094 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.04257 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05937 | 1 |
IL2-6/WTpooled | 1.19455 | 0.419 |
IL7-5/WTpooled | 1.5506 | 0.75 |
IL7-3/WTpooled | 1.09301 | 0.362 |
IL12-4/WTpooled | 1.11132 | 0.839 |
IL1-4/WTpooled | 0.94061 | 0.699 |
WT/WTpooled | 0.97771 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83732 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02688 | 0.921 |
DC3000/delta hrp 6h | 1.09624 | 1 |
DC3000/delta hrp 12h | 0.89131 | 1 |
DC3000/delta hrp 24h | 0.9666 | 0.794 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.48163 | 0.034 |
DC3000 delta B/DC3000 delta AB | 0.95687 | 0.674 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71304 | 1 |
Exp 36h | 1.35089 | 1 |
Exp 60h | 0.96261 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00934 | 1 |
Var 0h | 1.08037 | 0.936 |
Var 12h I row2-row1 | 0.77082 | 0.344 |
Var 12h NI row2-row1 | 0.91489 | 0.82 |
Var 36h I row2-row1 | 0.95094 | 1 |
Var 36h NI row2-row1 | 0.94782 | 1 |
Var 60h I row2-row1 | 1.05324 | 1 |
Var 60h NI row2-row1 | 1.17964 | 0.904 |
Time course 0hI-0hNI | 0.91249 | 0.352 |
Time course 12hI-12hNI | 0.98573 | 0.935 |
Time course 36hI-36hNI | 0.85054 | 0.03 |
Time course 60hI-60hNI | 0.30252 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09724 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 1.1488 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.97233 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08557 | 0.054 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06119 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.15134 | 0.096 |
Manapal/WT (break) | 1.08416 | 1 |
Manapal/WT (red) | 1.04802 | 1 |
|
|