Expression of 1-1-1.4.4.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972270.788
27DAP/17DAP0.89730.764
39DAP/27DAP1.020950.84
41DAP/39DAP0.739270.179
42DAP/41DAP0.702820.774
43DAP/42DAP0.731650.454
47DAP/43DAP0.339320.041
52DAP/47DAP1.323140.549
57DAP/52DAP1.44620.64

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.891610.007
17DAP/reference1.142130.787
27DAP/reference0.692410.013
39DAP/reference0.76530.027
41DAP/reference0.862490.114
42DAP/reference0.870220.016
43DAP/reference0.623450.013
47DAP/reference0.641760.002
52DAP/reference0.684670.021
57DAP/reference0.72680.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.285550.334
27DAP/17DAP1.066151
39DAP/27DAP0.417260.032
41DAP/39DAP1.6190.748
42DAP/41DAP0.923190.484
43DAP/42DAP0.705480.026
47DAP/43DAP0.808850.064
52DAP/47DAP0.929540.585
57DAP/52DAP1.112270.466
57DAP/7DAP0.529970.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.536750.024
17DAP/reference2.720520.007
27DAP/reference1.832640.007
39DAP/reference1.517850.006
41DAP/reference2.202630.009
42DAP/reference1.945480.03
43DAP/reference1.534620.024
47DAP/reference1.928510.014
52DAP/reference2.332130.01
57DAP/reference1.401380.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.471520.167
17DAP/reference2.034140.012
27DAP/reference1.983880.029
39DAP/reference1.420010.029
41DAP/reference1.356220.015
42DAP/reference1.668390.016
43DAP/reference0.795860.135
47DAP/reference1.258130.081
52DAP/reference1.211240.029
57DAP/reference0.772260.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.663320.015
17DAP/reference1.87810.104
27DAP/reference1.864230.014
39DAP/reference1.48130.018
41DAP/reference1.042260.754
42DAP/reference0.742870.036
43DAP/reference0.760450.073
47DAP/reference0.4940.005
52DAP/reference0.4970.047
57DAP/reference0.686410.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.504510.966
26DAP/20DAP2.458370.097
34DAP/26DAP0.86980.253
51DAP/34DAP0.964660.722
52DAP/51DAP1.027630.915
53DAP/52DAP1.016881
55DAP/53DAP0.821760.039
57DAP/55DAP1.133260.071
62DAP/57DAP0.929260.871
68DAP/62DAP1.195480.549
68DAP/14DAP1.273480.161

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.430760.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.43020.058
Mature Green Tomato/Ripe Tomato3.950740.015
Immature Eggplant/Mature Eggplant1.049060.379
Ripe Pepper/Ripe Tomato0.777631
Mature Eggplant/Ripe Tomato2.882190.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.54336
1-1-2/M820.939911
12-2/M821.12051
12-4/M820.667210.319
1-3/M821.64648
2-1-1/M820.548780.465
2-1/M82N/AN/A
2-6/M820.601230.501
3-2/M821.07958
4-1-1/M820.8561
4-1/M82N/AN/A
4-3-2/M821.00266
4-3/M820.869670.72
5-3/M821.130671
6-2/M820.86911
6-3/M821.088231
7-1/M821.17641
7-2/M820.905790.881
9-3-2/M820.704060.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.89986
IL2-6/WTpooled0.818731
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.212951
IL12-4/WTpooled0.944911
IL1-4/WTpooled1.04463
WT/WTpooled0.975351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.166880.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.289110.213
DC3000/delta hrp 6h1.176391
DC3000/delta hrp 12h1.527691
DC3000/delta hrp 24h1.098730.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.7450.024
DC3000 delta B/DC3000 delta AB0.849070.223

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.816640.328
Exp 36h1.402980.693
Exp 60h0.889320.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.052291
Var 0hN/AN/A
Var 12h I row2-row10.887620.338
Var 12h NI row2-row11.261780.649
Var 36h I row2-row11.037541
Var 36h NI row2-row10.580370.469
Var 60h I row2-row10.721550.287
Var 60h NI row2-row10.829560.866
Time course 0hI-0hNI0.966540.843
Time course 12hI-12hNI1.055910.668
Time course 36hI-36hNI1.247490.012
Time course 60hI-60hNI2.181250.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.022830.863
transgenic ySAMdc/azygous control (breaker)0.350130.118
transgenic ySAMdc/azygous control (red)1.077781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.959070.534

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.492150.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.125690.307
Manapal/WT (break)1.114121
Manapal/WT (red)0.915810.607