Expression of 1-1-1.4.4.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97227 | 0.788 |
27DAP/17DAP | 0.8973 | 0.764 |
39DAP/27DAP | 1.02095 | 0.84 |
41DAP/39DAP | 0.73927 | 0.179 |
42DAP/41DAP | 0.70282 | 0.774 |
43DAP/42DAP | 0.73165 | 0.454 |
47DAP/43DAP | 0.33932 | 0.041 |
52DAP/47DAP | 1.32314 | 0.549 |
57DAP/52DAP | 1.4462 | 0.64 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.89161 | 0.007 |
17DAP/reference | 1.14213 | 0.787 |
27DAP/reference | 0.69241 | 0.013 |
39DAP/reference | 0.7653 | 0.027 |
41DAP/reference | 0.86249 | 0.114 |
42DAP/reference | 0.87022 | 0.016 |
43DAP/reference | 0.62345 | 0.013 |
47DAP/reference | 0.64176 | 0.002 |
52DAP/reference | 0.68467 | 0.021 |
57DAP/reference | 0.7268 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28555 | 0.334 |
27DAP/17DAP | 1.06615 | 1 |
39DAP/27DAP | 0.41726 | 0.032 |
41DAP/39DAP | 1.619 | 0.748 |
42DAP/41DAP | 0.92319 | 0.484 |
43DAP/42DAP | 0.70548 | 0.026 |
47DAP/43DAP | 0.80885 | 0.064 |
52DAP/47DAP | 0.92954 | 0.585 |
57DAP/52DAP | 1.11227 | 0.466 |
57DAP/7DAP | 0.52997 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 4.53675 | 0.024 |
17DAP/reference | 2.72052 | 0.007 |
27DAP/reference | 1.83264 | 0.007 |
39DAP/reference | 1.51785 | 0.006 |
41DAP/reference | 2.20263 | 0.009 |
42DAP/reference | 1.94548 | 0.03 |
43DAP/reference | 1.53462 | 0.024 |
47DAP/reference | 1.92851 | 0.014 |
52DAP/reference | 2.33213 | 0.01 |
57DAP/reference | 1.40138 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47152 | 0.167 |
17DAP/reference | 2.03414 | 0.012 |
27DAP/reference | 1.98388 | 0.029 |
39DAP/reference | 1.42001 | 0.029 |
41DAP/reference | 1.35622 | 0.015 |
42DAP/reference | 1.66839 | 0.016 |
43DAP/reference | 0.79586 | 0.135 |
47DAP/reference | 1.25813 | 0.081 |
52DAP/reference | 1.21124 | 0.029 |
57DAP/reference | 0.77226 | 0.058 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.66332 | 0.015 |
17DAP/reference | 1.8781 | 0.104 |
27DAP/reference | 1.86423 | 0.014 |
39DAP/reference | 1.4813 | 0.018 |
41DAP/reference | 1.04226 | 0.754 |
42DAP/reference | 0.74287 | 0.036 |
43DAP/reference | 0.76045 | 0.073 |
47DAP/reference | 0.494 | 0.005 |
52DAP/reference | 0.497 | 0.047 |
57DAP/reference | 0.68641 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.50451 | 0.966 |
26DAP/20DAP | 2.45837 | 0.097 |
34DAP/26DAP | 0.8698 | 0.253 |
51DAP/34DAP | 0.96466 | 0.722 |
52DAP/51DAP | 1.02763 | 0.915 |
53DAP/52DAP | 1.01688 | 1 |
55DAP/53DAP | 0.82176 | 0.039 |
57DAP/55DAP | 1.13326 | 0.071 |
62DAP/57DAP | 0.92926 | 0.871 |
68DAP/62DAP | 1.19548 | 0.549 |
68DAP/14DAP | 1.27348 | 0.161 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.43076 | 0.024 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.4302 | 0.058 |
Mature Green Tomato/Ripe Tomato | 3.95074 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.04906 | 0.379 |
Ripe Pepper/Ripe Tomato | 0.77763 | 1 |
Mature Eggplant/Ripe Tomato | 2.88219 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.54336 | |
1-1-2/M82 | 0.93991 | 1 |
12-2/M82 | 1.1205 | 1 |
12-4/M82 | 0.66721 | 0.319 |
1-3/M82 | 1.64648 | |
2-1-1/M82 | 0.54878 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.60123 | 0.501 |
3-2/M82 | 1.07958 | |
4-1-1/M82 | 0.856 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.00266 | |
4-3/M82 | 0.86967 | 0.72 |
5-3/M82 | 1.13067 | 1 |
6-2/M82 | 0.8691 | 1 |
6-3/M82 | 1.08823 | 1 |
7-1/M82 | 1.17641 | |
7-2/M82 | 0.90579 | 0.881 |
9-3-2/M82 | 0.70406 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89986 | |
IL2-6/WTpooled | 0.81873 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.21295 | 1 |
IL12-4/WTpooled | 0.94491 | 1 |
IL1-4/WTpooled | 1.04463 | |
WT/WTpooled | 0.97535 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16688 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.28911 | 0.213 |
DC3000/delta hrp 6h | 1.17639 | 1 |
DC3000/delta hrp 12h | 1.52769 | 1 |
DC3000/delta hrp 24h | 1.09873 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.745 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.84907 | 0.223 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81664 | 0.328 |
Exp 36h | 1.40298 | 0.693 |
Exp 60h | 0.88932 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05229 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.88762 | 0.338 |
Var 12h NI row2-row1 | 1.26178 | 0.649 |
Var 36h I row2-row1 | 1.03754 | 1 |
Var 36h NI row2-row1 | 0.58037 | 0.469 |
Var 60h I row2-row1 | 0.72155 | 0.287 |
Var 60h NI row2-row1 | 0.82956 | 0.866 |
Time course 0hI-0hNI | 0.96654 | 0.843 |
Time course 12hI-12hNI | 1.05591 | 0.668 |
Time course 36hI-36hNI | 1.24749 | 0.012 |
Time course 60hI-60hNI | 2.18125 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02283 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.35013 | 0.118 |
transgenic ySAMdc/azygous control (red) | 1.07778 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95907 | 0.534 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.49215 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.12569 | 0.307 |
Manapal/WT (break) | 1.11412 | 1 |
Manapal/WT (red) | 0.91581 | 0.607 |
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