Expression of 1-1-1.4.4.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02967 | 0.904 |
27DAP/17DAP | 1.0465 | 0.89 |
39DAP/27DAP | 0.79809 | 0.286 |
41DAP/39DAP | 1.3229 | 0.363 |
42DAP/41DAP | 0.93389 | 1 |
43DAP/42DAP | 0.97084 | 0.887 |
47DAP/43DAP | 1.02391 | 0.95 |
52DAP/47DAP | 1.03741 | 0.945 |
57DAP/52DAP | 1.10155 | 0.849 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05466 | 0.334 |
17DAP/reference | 0.96776 | 0.393 |
27DAP/reference | 0.96948 | 0.314 |
39DAP/reference | 0.9551 | 0.306 |
41DAP/reference | 1.02921 | 0.48 |
42DAP/reference | 1.15773 | 0.012 |
43DAP/reference | 0.93422 | 0.118 |
47DAP/reference | 1.05714 | 0.125 |
52DAP/reference | 1.07475 | 0.242 |
57DAP/reference | 1.11798 | 0.132 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 1.48716 | 0.771 |
39DAP/27DAP | 1.70787 | 0.062 |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 1.04307 | 1 |
43DAP/42DAP | 0.84341 | 0.729 |
47DAP/43DAP | 3.90093 | 0.772 |
52DAP/47DAP | 1.00642 | 0.947 |
57DAP/52DAP | 0.78927 | 0.407 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88174 | 0.183 |
17DAP/reference | 0.87512 | 0.012 |
27DAP/reference | 0.91463 | 0.014 |
39DAP/reference | 0.84966 | 0.015 |
41DAP/reference | 0.97156 | 0.326 |
42DAP/reference | 0.85249 | 0.022 |
43DAP/reference | 0.86199 | 0.016 |
47DAP/reference | 0.93548 | 0.222 |
52DAP/reference | 0.84393 | 0.014 |
57DAP/reference | 0.78659 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0756 | 0.463 |
17DAP/reference | 1.07262 | 0.375 |
27DAP/reference | 1.06261 | 0.552 |
39DAP/reference | 1.07134 | 0.401 |
41DAP/reference | 1.02095 | 1 |
42DAP/reference | 1.1106 | 0.129 |
43DAP/reference | 1.13432 | 0.211 |
47DAP/reference | 1.08224 | 0.128 |
52DAP/reference | 1.12547 | 0.061 |
57DAP/reference | 1.16043 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94161 | 0.214 |
17DAP/reference | 0.97355 | 0.579 |
27DAP/reference | 0.8657 | 0.047 |
39DAP/reference | 0.91769 | 0.076 |
41DAP/reference | 0.94406 | 0.417 |
42DAP/reference | 0.98776 | 0.816 |
43DAP/reference | 1.0642 | 0.679 |
47DAP/reference | 1.04432 | 0.501 |
52DAP/reference | 0.85345 | 0.223 |
57DAP/reference | 1.10622 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02036 | 0.966 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.88709 | 0.945 |
51DAP/34DAP | 1.48087 | |
52DAP/51DAP | 1.09557 | |
53DAP/52DAP | 1.46128 | 0.845 |
55DAP/53DAP | N/A | N/A |
57DAP/55DAP | 0.95369 | 0.867 |
62DAP/57DAP | 1.02987 | 1 |
68DAP/62DAP | 0.96072 | 0.834 |
68DAP/14DAP | 0.86561 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.35603 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.9023 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.93184 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.00079 | 1 |
Ripe Pepper/Ripe Tomato | 1.1579 | 1 |
Mature Eggplant/Ripe Tomato | 2.21071 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96034 | 0.934 |
1-1-2/M82 | 1.00232 | 1 |
12-2/M82 | 0.94549 | 0.955 |
12-4/M82 | 0.98011 | 1 |
1-3/M82 | 0.97745 | 1 |
2-1-1/M82 | 0.98282 | 1 |
2-1/M82 | 1.15066 | 1 |
2-6/M82 | 0.95431 | 1 |
3-2/M82 | 0.82096 | 0.423 |
4-1-1/M82 | 0.93658 | 1 |
4-1/M82 | 1.00625 | 1 |
4-3-2/M82 | 0.87389 | 1 |
4-3/M82 | 0.99298 | 1 |
5-3/M82 | 1.05455 | 0.572 |
6-2/M82 | 1.03456 | 1 |
6-3/M82 | 1.0299 | 1 |
7-1/M82 | 1.01256 | 1 |
7-2/M82 | 0.96882 | 1 |
9-3-2/M82 | 0.79419 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.63687 | 0.321 |
IL2-6/WTpooled | 1.06927 | 0.659 |
IL7-5/WTpooled | 1.15972 | 1 |
IL7-3/WTpooled | 0.82751 | 0.418 |
IL12-4/WTpooled | 0.89292 | 0.71 |
IL1-4/WTpooled | 0.89094 | 0.699 |
WT/WTpooled | 0.8933 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86371 | 0.868 |
DC3000/delta hrp 6h | 1.13471 | 1 |
DC3000/delta hrp 12h | 0.88864 | 1 |
DC3000/delta hrp 24h | 1.03421 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87714 | 1 |
Exp 36h | 0.80326 | 0.589 |
Exp 60h | 0.68021 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.91097 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16636 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 2.16845 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.80331 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94686 | 0.095 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.5191 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.01542 | 0.083 |
Manapal/WT (break) | 4.83131 | 0.13 |
Manapal/WT (red) | 4.52298 | 0.137 |
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