Expression of 1-1-1.4.4.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029670.904
27DAP/17DAP1.04650.89
39DAP/27DAP0.798090.286
41DAP/39DAP1.32290.363
42DAP/41DAP0.933891
43DAP/42DAP0.970840.887
47DAP/43DAP1.023910.95
52DAP/47DAP1.037410.945
57DAP/52DAP1.101550.849

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.054660.334
17DAP/reference0.967760.393
27DAP/reference0.969480.314
39DAP/reference0.95510.306
41DAP/reference1.029210.48
42DAP/reference1.157730.012
43DAP/reference0.934220.118
47DAP/reference1.057140.125
52DAP/reference1.074750.242
57DAP/reference1.117980.132

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.487160.771
39DAP/27DAP1.707870.062
41DAP/39DAPN/AN/A
42DAP/41DAP1.043071
43DAP/42DAP0.843410.729
47DAP/43DAP3.900930.772
52DAP/47DAP1.006420.947
57DAP/52DAP0.789270.407
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.881740.183
17DAP/reference0.875120.012
27DAP/reference0.914630.014
39DAP/reference0.849660.015
41DAP/reference0.971560.326
42DAP/reference0.852490.022
43DAP/reference0.861990.016
47DAP/reference0.935480.222
52DAP/reference0.843930.014
57DAP/reference0.786590.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07560.463
17DAP/reference1.072620.375
27DAP/reference1.062610.552
39DAP/reference1.071340.401
41DAP/reference1.020951
42DAP/reference1.11060.129
43DAP/reference1.134320.211
47DAP/reference1.082240.128
52DAP/reference1.125470.061
57DAP/reference1.160430.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.941610.214
17DAP/reference0.973550.579
27DAP/reference0.86570.047
39DAP/reference0.917690.076
41DAP/reference0.944060.417
42DAP/reference0.987760.816
43DAP/reference1.06420.679
47DAP/reference1.044320.501
52DAP/reference0.853450.223
57DAP/reference1.106220.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.020360.966
26DAP/20DAPN/AN/A
34DAP/26DAP0.887090.945
51DAP/34DAP1.48087
52DAP/51DAP1.09557
53DAP/52DAP1.461280.845
55DAP/53DAPN/AN/A
57DAP/55DAP0.953690.867
62DAP/57DAP1.029871
68DAP/62DAP0.960720.834
68DAP/14DAP0.865611

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.35603

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.90230.068
Mature Green Tomato/Ripe Tomato0.931840.487
Immature Eggplant/Mature Eggplant1.000791
Ripe Pepper/Ripe Tomato1.15791
Mature Eggplant/Ripe Tomato2.210711

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.960340.934
1-1-2/M821.002321
12-2/M820.945490.955
12-4/M820.980111
1-3/M820.977451
2-1-1/M820.982821
2-1/M821.150661
2-6/M820.954311
3-2/M820.820960.423
4-1-1/M820.936581
4-1/M821.006251
4-3-2/M820.873891
4-3/M820.992981
5-3/M821.054550.572
6-2/M821.034561
6-3/M821.02991
7-1/M821.012561
7-2/M820.968821
9-3-2/M820.794190.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.636870.321
IL2-6/WTpooled1.069270.659
IL7-5/WTpooled1.159721
IL7-3/WTpooled0.827510.418
IL12-4/WTpooled0.892920.71
IL1-4/WTpooled0.890940.699
WT/WTpooled0.89331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.863710.868
DC3000/delta hrp 6h1.134711
DC3000/delta hrp 12h0.888641
DC3000/delta hrp 24h1.034210.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.877141
Exp 36h0.803260.589
Exp 60h0.680210.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.910971
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.166360.278
transgenic ySAMdc/azygous control (breaker)2.168450.172
transgenic ySAMdc/azygous control (red)1.803310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.946860.095

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.51910.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.015420.083
Manapal/WT (break)4.831310.13
Manapal/WT (red)4.522980.137