Expression of 1-1-1.4.7.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.066370.878
27DAP/17DAP0.787230.359
39DAP/27DAP1.10340.864
41DAP/39DAP1.138570.649
42DAP/41DAP1.210430.958
43DAP/42DAP1.132231
47DAP/43DAP0.89380.64
52DAP/47DAP1.069820.924
57DAP/52DAP0.929470.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.047990.46
17DAP/reference1.00820.675
27DAP/reference1.007580.894
39DAP/reference1.178470.423
41DAP/reference1.037870.48
42DAP/reference0.970640.326
43DAP/reference1.005760.982
47DAP/reference0.945460.322
52DAP/reference0.98290.504
57DAP/reference1.060770.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.360580.398
27DAP/17DAP1.03130.945
39DAP/27DAP0.807930.156
41DAP/39DAP1.188110.735
42DAP/41DAP1.091560.816
43DAP/42DAP1.200080.664
47DAP/43DAP0.93930.743
52DAP/47DAP0.968790.899
57DAP/52DAP0.971670.657
57DAP/7DAP1.007081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.154740.399
17DAP/reference0.908260.192
27DAP/reference1.028711
39DAP/reference0.987670.552
41DAP/reference1.068950.791
42DAP/reference1.076690.751
43DAP/reference1.151140.2
47DAP/reference0.852420.079
52DAP/reference1.006390.571
57DAP/reference1.073160.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026060.776
17DAP/reference0.977630.499
27DAP/reference1.072530.463
39DAP/reference0.974020.208
41DAP/reference0.910490.03
42DAP/reference1.013511
43DAP/reference1.06210.769
47DAP/reference0.994620.625
52DAP/reference0.983060.469
57DAP/reference1.020020.672

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963010.607
17DAP/reference1.052340.854
27DAP/reference1.05081
39DAP/reference0.779420.133
41DAP/reference1.264160.621
42DAP/reference0.966910.671
43DAP/reference1.052030.646
47DAP/reference0.982190.494
52DAP/reference1.00730.965
57DAP/reference0.961220.468

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.978181
26DAP/20DAP2.029210.099
34DAP/26DAP1.124591
51DAP/34DAP0.897230.563
52DAP/51DAP1.168020.904
53DAP/52DAP1.112320.753
55DAP/53DAP1.527580.204
57DAP/55DAP1.024830.904
62DAP/57DAP0.859040.088
68DAP/62DAP0.868940.7
68DAP/14DAP0.940721

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.021850.306

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.19462
Mature Green Tomato/Ripe Tomato0.69909
Immature Eggplant/Mature Eggplant2.154040.061
Ripe Pepper/Ripe Tomato0.64193
Mature Eggplant/Ripe Tomato0.35199

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.30277
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M820.85118
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.8630.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.796060.493
IL2-6/WTpooled0.993231
IL7-5/WTpooled1.499390.792
IL7-3/WTpooled1.259941
IL12-4/WTpooled1.074670.891
IL1-4/WTpooled1.082741
WT/WTpooled0.90751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.0784

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.115790.921
DC3000/delta hrp 6h1.345531
DC3000/delta hrp 12h0.965281
DC3000/delta hrp 24h1.648870.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97593
Var 0h1.183860.263
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row11.05951
Var 36h I row2-row10.871411
Var 36h NI row2-row11.49524
Var 60h I row2-row11.05181
Var 60h NI row2-row10.658760.977
Time course 0hI-0hNI1.061591
Time course 12hI-12hNI1.437370.461
Time course 36hI-36hNI1.527670.73
Time course 60hI-60hNI1.430430.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.820430.33
transgenic ySAMdc/azygous control (breaker)1.497221
transgenic ySAMdc/azygous control (red)1.40690.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.968830.156

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.048921

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.065681
Manapal/WT (break)1.192881
Manapal/WT (red)1.126350.413