Expression of 1-1-1.4.7.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06637 | 0.878 |
27DAP/17DAP | 0.78723 | 0.359 |
39DAP/27DAP | 1.1034 | 0.864 |
41DAP/39DAP | 1.13857 | 0.649 |
42DAP/41DAP | 1.21043 | 0.958 |
43DAP/42DAP | 1.13223 | 1 |
47DAP/43DAP | 0.8938 | 0.64 |
52DAP/47DAP | 1.06982 | 0.924 |
57DAP/52DAP | 0.92947 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04799 | 0.46 |
17DAP/reference | 1.0082 | 0.675 |
27DAP/reference | 1.00758 | 0.894 |
39DAP/reference | 1.17847 | 0.423 |
41DAP/reference | 1.03787 | 0.48 |
42DAP/reference | 0.97064 | 0.326 |
43DAP/reference | 1.00576 | 0.982 |
47DAP/reference | 0.94546 | 0.322 |
52DAP/reference | 0.9829 | 0.504 |
57DAP/reference | 1.06077 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.36058 | 0.398 |
27DAP/17DAP | 1.0313 | 0.945 |
39DAP/27DAP | 0.80793 | 0.156 |
41DAP/39DAP | 1.18811 | 0.735 |
42DAP/41DAP | 1.09156 | 0.816 |
43DAP/42DAP | 1.20008 | 0.664 |
47DAP/43DAP | 0.9393 | 0.743 |
52DAP/47DAP | 0.96879 | 0.899 |
57DAP/52DAP | 0.97167 | 0.657 |
57DAP/7DAP | 1.00708 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15474 | 0.399 |
17DAP/reference | 0.90826 | 0.192 |
27DAP/reference | 1.02871 | 1 |
39DAP/reference | 0.98767 | 0.552 |
41DAP/reference | 1.06895 | 0.791 |
42DAP/reference | 1.07669 | 0.751 |
43DAP/reference | 1.15114 | 0.2 |
47DAP/reference | 0.85242 | 0.079 |
52DAP/reference | 1.00639 | 0.571 |
57DAP/reference | 1.07316 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02606 | 0.776 |
17DAP/reference | 0.97763 | 0.499 |
27DAP/reference | 1.07253 | 0.463 |
39DAP/reference | 0.97402 | 0.208 |
41DAP/reference | 0.91049 | 0.03 |
42DAP/reference | 1.01351 | 1 |
43DAP/reference | 1.0621 | 0.769 |
47DAP/reference | 0.99462 | 0.625 |
52DAP/reference | 0.98306 | 0.469 |
57DAP/reference | 1.02002 | 0.672 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96301 | 0.607 |
17DAP/reference | 1.05234 | 0.854 |
27DAP/reference | 1.05081 | |
39DAP/reference | 0.77942 | 0.133 |
41DAP/reference | 1.26416 | 0.621 |
42DAP/reference | 0.96691 | 0.671 |
43DAP/reference | 1.05203 | 0.646 |
47DAP/reference | 0.98219 | 0.494 |
52DAP/reference | 1.0073 | 0.965 |
57DAP/reference | 0.96122 | 0.468 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97818 | 1 |
26DAP/20DAP | 2.02921 | 0.099 |
34DAP/26DAP | 1.12459 | 1 |
51DAP/34DAP | 0.89723 | 0.563 |
52DAP/51DAP | 1.16802 | 0.904 |
53DAP/52DAP | 1.11232 | 0.753 |
55DAP/53DAP | 1.52758 | 0.204 |
57DAP/55DAP | 1.02483 | 0.904 |
62DAP/57DAP | 0.85904 | 0.088 |
68DAP/62DAP | 0.86894 | 0.7 |
68DAP/14DAP | 0.94072 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.02185 | 0.306 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19462 | |
Mature Green Tomato/Ripe Tomato | 0.69909 | |
Immature Eggplant/Mature Eggplant | 2.15404 | 0.061 |
Ripe Pepper/Ripe Tomato | 0.64193 | |
Mature Eggplant/Ripe Tomato | 0.35199 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.30277 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.85118 | |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.863 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.79606 | 0.493 |
IL2-6/WTpooled | 0.99323 | 1 |
IL7-5/WTpooled | 1.49939 | 0.792 |
IL7-3/WTpooled | 1.25994 | 1 |
IL12-4/WTpooled | 1.07467 | 0.891 |
IL1-4/WTpooled | 1.08274 | 1 |
WT/WTpooled | 0.9075 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0784 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11579 | 0.921 |
DC3000/delta hrp 6h | 1.34553 | 1 |
DC3000/delta hrp 12h | 0.96528 | 1 |
DC3000/delta hrp 24h | 1.64887 | 0.041 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97593 | |
Var 0h | 1.18386 | 0.263 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 1.05951 | |
Var 36h I row2-row1 | 0.87141 | 1 |
Var 36h NI row2-row1 | 1.49524 | |
Var 60h I row2-row1 | 1.0518 | 1 |
Var 60h NI row2-row1 | 0.65876 | 0.977 |
Time course 0hI-0hNI | 1.06159 | 1 |
Time course 12hI-12hNI | 1.43737 | 0.461 |
Time course 36hI-36hNI | 1.52767 | 0.73 |
Time course 60hI-60hNI | 1.43043 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.82043 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.49722 | 1 |
transgenic ySAMdc/azygous control (red) | 1.4069 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96883 | 0.156 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04892 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06568 | 1 |
Manapal/WT (break) | 1.19288 | 1 |
Manapal/WT (red) | 1.12635 | 0.413 |
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