Expression of 1-1-1.4.8.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP4.625150.033
27DAP/17DAP1.042330.902
39DAP/27DAP1.104740.732
41DAP/39DAP0.89180.555
42DAP/41DAP1.082860.971
43DAP/42DAP1.182330.875
47DAP/43DAP1.039980.746
52DAP/47DAP0.902820.694
57DAP/52DAP1.261480.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.779610.14
17DAP/reference1.141460.143
27DAP/reference1.337010.022
39DAP/reference1.390360.017
41DAP/reference1.352390.067
42DAP/reference1.817290.001
43DAP/reference1.450640.014
47DAP/reference1.7640.001
52DAP/reference1.483820.01
57DAP/reference1.214290.05

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.270930.036
27DAP/17DAP1.152870.598
39DAP/27DAP1.016890.799
41DAP/39DAP1.143110.098
42DAP/41DAP0.953450.659
43DAP/42DAP0.897420.052
47DAP/43DAP0.983940.933
52DAP/47DAP1.01993
57DAP/52DAP1.040610.832
57DAP/7DAP1.77207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.811680.091
17DAP/reference1.357980.007
27DAP/reference1.229290.06
39DAP/reference1.619310.008
41DAP/reference1.855660.009
42DAP/reference2.543310.007
43DAP/reference3.451820.006
47DAP/reference2.104030.073
52DAP/reference3.13010.007
57DAP/reference3.081030.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.578960.008
17DAP/reference1.089970.658
27DAP/reference1.551460.131
39DAP/reference1.896810.02
41DAP/reference2.011110.032
42DAP/reference1.801890.011
43DAP/reference1.000660.761
47DAP/reference1.356410.061
52DAP/reference1.766690.007
57DAP/reference1.211480.494

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.39420.03
17DAP/reference0.971860.647
27DAP/reference1.039310.967
39DAP/reference1.430060.009
41DAP/reference0.899730.209
42DAP/reference1.55720.015
43DAP/reference1.422340.018
47DAP/reference1.286450.339
52DAP/reference1.608420.1
57DAP/reference1.573270.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.99161
26DAP/20DAP1.324320.192
34DAP/26DAP0.838920.127
51DAP/34DAP0.662180.051
52DAP/51DAP0.962621
53DAP/52DAP1.0191
55DAP/53DAP0.80847
57DAP/55DAP1.160510.865
62DAP/57DAP1.16570.622
68DAP/62DAP1.000770.939
68DAP/14DAP1.0550.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.185410.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.356750.058
Mature Green Tomato/Ripe Tomato0.77971
Immature Eggplant/Mature Eggplant0.64390.064
Ripe Pepper/Ripe Tomato0.49970.293
Mature Eggplant/Ripe Tomato0.149280.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.994651
1-1-2/M821.025731
12-2/M820.890770.955
12-4/M820.998111
1-3/M821.008741
2-1-1/M820.815460.683
2-1/M820.983851
2-6/M820.926021
3-2/M820.976831
4-1-1/M821.191531
4-1/M821.058671
4-3-2/M820.782310.698
4-3/M820.907281
5-3/M820.969231
6-2/M820.925811
6-3/M821.022241
7-1/M820.985490.803
7-2/M820.935890.881
9-3-2/M820.93680.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.882570.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.77533
IL12-4/WTpooled0.82810.71
IL1-4/WTpooled1.14289
WT/WTpooled1.065881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.807870.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.978041
DC3000/delta hrp 6h1.139361
DC3000/delta hrp 12h1.054651
DC3000/delta hrp 24h1.075140.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.664060.03
DC3000 delta B/DC3000 delta AB0.746720.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.908741
Exp 36h1.173351
Exp 60h0.887310.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967991
Var 0h0.563541
Var 12h I row2-row10.983040.948
Var 12h NI row2-row10.987151
Var 36h I row2-row10.95540.805
Var 36h NI row2-row11.294141
Var 60h I row2-row11.201920.562
Var 60h NI row2-row11.102690.904
Time course 0hI-0hNI1.050430.603
Time course 12hI-12hNI0.947060.515
Time course 36hI-36hNI0.884810.05
Time course 60hI-60hNI0.621160.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.029330.798
transgenic ySAMdc/azygous control (breaker)1.095071
transgenic ySAMdc/azygous control (red)0.934991

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.003780.811

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.768580.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.065240.105
Manapal/WT (break)0.964661
Manapal/WT (red)0.909040.424