Expression of 1-1-1.4.8.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 4.62515 | 0.033 |
27DAP/17DAP | 1.04233 | 0.902 |
39DAP/27DAP | 1.10474 | 0.732 |
41DAP/39DAP | 0.8918 | 0.555 |
42DAP/41DAP | 1.08286 | 0.971 |
43DAP/42DAP | 1.18233 | 0.875 |
47DAP/43DAP | 1.03998 | 0.746 |
52DAP/47DAP | 0.90282 | 0.694 |
57DAP/52DAP | 1.26148 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77961 | 0.14 |
17DAP/reference | 1.14146 | 0.143 |
27DAP/reference | 1.33701 | 0.022 |
39DAP/reference | 1.39036 | 0.017 |
41DAP/reference | 1.35239 | 0.067 |
42DAP/reference | 1.81729 | 0.001 |
43DAP/reference | 1.45064 | 0.014 |
47DAP/reference | 1.764 | 0.001 |
52DAP/reference | 1.48382 | 0.01 |
57DAP/reference | 1.21429 | 0.05 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.27093 | 0.036 |
27DAP/17DAP | 1.15287 | 0.598 |
39DAP/27DAP | 1.01689 | 0.799 |
41DAP/39DAP | 1.14311 | 0.098 |
42DAP/41DAP | 0.95345 | 0.659 |
43DAP/42DAP | 0.89742 | 0.052 |
47DAP/43DAP | 0.98394 | 0.933 |
52DAP/47DAP | 1.01993 | |
57DAP/52DAP | 1.04061 | 0.832 |
57DAP/7DAP | 1.77207 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81168 | 0.091 |
17DAP/reference | 1.35798 | 0.007 |
27DAP/reference | 1.22929 | 0.06 |
39DAP/reference | 1.61931 | 0.008 |
41DAP/reference | 1.85566 | 0.009 |
42DAP/reference | 2.54331 | 0.007 |
43DAP/reference | 3.45182 | 0.006 |
47DAP/reference | 2.10403 | 0.073 |
52DAP/reference | 3.1301 | 0.007 |
57DAP/reference | 3.08103 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.57896 | 0.008 |
17DAP/reference | 1.08997 | 0.658 |
27DAP/reference | 1.55146 | 0.131 |
39DAP/reference | 1.89681 | 0.02 |
41DAP/reference | 2.01111 | 0.032 |
42DAP/reference | 1.80189 | 0.011 |
43DAP/reference | 1.00066 | 0.761 |
47DAP/reference | 1.35641 | 0.061 |
52DAP/reference | 1.76669 | 0.007 |
57DAP/reference | 1.21148 | 0.494 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.3942 | 0.03 |
17DAP/reference | 0.97186 | 0.647 |
27DAP/reference | 1.03931 | 0.967 |
39DAP/reference | 1.43006 | 0.009 |
41DAP/reference | 0.89973 | 0.209 |
42DAP/reference | 1.5572 | 0.015 |
43DAP/reference | 1.42234 | 0.018 |
47DAP/reference | 1.28645 | 0.339 |
52DAP/reference | 1.60842 | 0.1 |
57DAP/reference | 1.57327 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9916 | 1 |
26DAP/20DAP | 1.32432 | 0.192 |
34DAP/26DAP | 0.83892 | 0.127 |
51DAP/34DAP | 0.66218 | 0.051 |
52DAP/51DAP | 0.96262 | 1 |
53DAP/52DAP | 1.0191 | |
55DAP/53DAP | 0.80847 | |
57DAP/55DAP | 1.16051 | 0.865 |
62DAP/57DAP | 1.1657 | 0.622 |
68DAP/62DAP | 1.00077 | 0.939 |
68DAP/14DAP | 1.055 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.18541 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.35675 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.77971 | |
Immature Eggplant/Mature Eggplant | 0.6439 | 0.064 |
Ripe Pepper/Ripe Tomato | 0.4997 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.14928 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99465 | 1 |
1-1-2/M82 | 1.02573 | 1 |
12-2/M82 | 0.89077 | 0.955 |
12-4/M82 | 0.99811 | 1 |
1-3/M82 | 1.00874 | 1 |
2-1-1/M82 | 0.81546 | 0.683 |
2-1/M82 | 0.98385 | 1 |
2-6/M82 | 0.92602 | 1 |
3-2/M82 | 0.97683 | 1 |
4-1-1/M82 | 1.19153 | 1 |
4-1/M82 | 1.05867 | 1 |
4-3-2/M82 | 0.78231 | 0.698 |
4-3/M82 | 0.90728 | 1 |
5-3/M82 | 0.96923 | 1 |
6-2/M82 | 0.92581 | 1 |
6-3/M82 | 1.02224 | 1 |
7-1/M82 | 0.98549 | 0.803 |
7-2/M82 | 0.93589 | 0.881 |
9-3-2/M82 | 0.9368 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88257 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.77533 | |
IL12-4/WTpooled | 0.8281 | 0.71 |
IL1-4/WTpooled | 1.14289 | |
WT/WTpooled | 1.06588 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80787 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97804 | 1 |
DC3000/delta hrp 6h | 1.13936 | 1 |
DC3000/delta hrp 12h | 1.05465 | 1 |
DC3000/delta hrp 24h | 1.07514 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.66406 | 0.03 |
DC3000 delta B/DC3000 delta AB | 0.74672 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90874 | 1 |
Exp 36h | 1.17335 | 1 |
Exp 60h | 0.88731 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96799 | 1 |
Var 0h | 0.56354 | 1 |
Var 12h I row2-row1 | 0.98304 | 0.948 |
Var 12h NI row2-row1 | 0.98715 | 1 |
Var 36h I row2-row1 | 0.9554 | 0.805 |
Var 36h NI row2-row1 | 1.29414 | 1 |
Var 60h I row2-row1 | 1.20192 | 0.562 |
Var 60h NI row2-row1 | 1.10269 | 0.904 |
Time course 0hI-0hNI | 1.05043 | 0.603 |
Time course 12hI-12hNI | 0.94706 | 0.515 |
Time course 36hI-36hNI | 0.88481 | 0.05 |
Time course 60hI-60hNI | 0.62116 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02933 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.09507 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93499 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00378 | 0.811 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76858 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06524 | 0.105 |
Manapal/WT (break) | 0.96466 | 1 |
Manapal/WT (red) | 0.90904 | 0.424 |
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