Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.4.8.16

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03565	1
27DAP/17DAP	1.60001	0.688
39DAP/27DAP	0.69127	0.529
41DAP/39DAP	0.61033	0.069
42DAP/41DAP	0.88344	1
43DAP/42DAP	1.35782	1
47DAP/43DAP	1.30507	0.756
52DAP/47DAP	1.29314	0.964
57DAP/52DAP	0.91922	0.919

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	0.46066	0.009
27DAP/reference	0.66011	0.208
39DAP/reference	0.57983	0.132
41DAP/reference	2.07686	0.714
42DAP/reference	0.90723	0.233
43DAP/reference	0.6618	0.222
47DAP/reference	1.59596
52DAP/reference	1.49811	0.663
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.72536	0.178
27DAP/17DAP	0.92552	0.782
39DAP/27DAP	0.81396	0.124
41DAP/39DAP	0.65398	0.017
42DAP/41DAP	1.1254	0.415
43DAP/42DAP	1.09846	0.147
47DAP/43DAP	0.89351	0.516
52DAP/47DAP	0.93095	0.753
57DAP/52DAP	1.07209	0.941
57DAP/7DAP	0.59666

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99672	0.682
17DAP/reference	0.67068	0.017
27DAP/reference	0.68701	0.146
39DAP/reference	1.16033	0.175
41DAP/reference	1.12391	0.891
42DAP/reference	0.85637	0.169
43DAP/reference	1.04296	1
47DAP/reference	0.95738	0.671
52DAP/reference	1.10874	0.247
57DAP/reference	0.77561	0.074

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.76867	0.056
17DAP/reference	1.20353	0.518
27DAP/reference	0.71397	0.051
39DAP/reference	1.09578	0.657
41DAP/reference	0.36351
42DAP/reference	2.15002	0.025
43DAP/reference	1.97531
47DAP/reference	0.93476	0.379
52DAP/reference	0.98585	0.619
57DAP/reference	1.4749	0.208

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.87384	0.489
17DAP/reference	0.63137
27DAP/reference	N/A	N/A
39DAP/reference	1.06197
41DAP/reference	0.91585	0.682
42DAP/reference	1.90804	0.013
43DAP/reference	0.66926
47DAP/reference	N/A	N/A
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.82701	1
26DAP/20DAP	0.82273
34DAP/26DAP	N/A	N/A
51DAP/34DAP	0.91732	0.64
52DAP/51DAP	2.88207	0.108
53DAP/52DAP	1.3311	0.806
55DAP/53DAP	1.4219	0.842
57DAP/55DAP	0.80787	0.638
62DAP/57DAP	3.3357	0.868
68DAP/62DAP	1.93454
68DAP/14DAP	1.44953

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.24784	0.277
IL2-6/WTpooled	1.20729	0.531
IL7-5/WTpooled	0.60737	1
IL7-3/WTpooled	1.18116	1
IL12-4/WTpooled	0.73055	0.497
IL1-4/WTpooled	1.2587	1
WT/WTpooled	0.83557	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	1.11614	1
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.58931	0.03
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.95489	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	0.96682
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.79071	0.123
Manapal/WT (red)	1.51513	0.413