Expression of 1-1-1.4.8.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03565 | 1 |
27DAP/17DAP | 1.60001 | 0.688 |
39DAP/27DAP | 0.69127 | 0.529 |
41DAP/39DAP | 0.61033 | 0.069 |
42DAP/41DAP | 0.88344 | 1 |
43DAP/42DAP | 1.35782 | 1 |
47DAP/43DAP | 1.30507 | 0.756 |
52DAP/47DAP | 1.29314 | 0.964 |
57DAP/52DAP | 0.91922 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.46066 | 0.009 |
27DAP/reference | 0.66011 | 0.208 |
39DAP/reference | 0.57983 | 0.132 |
41DAP/reference | 2.07686 | 0.714 |
42DAP/reference | 0.90723 | 0.233 |
43DAP/reference | 0.6618 | 0.222 |
47DAP/reference | 1.59596 | |
52DAP/reference | 1.49811 | 0.663 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72536 | 0.178 |
27DAP/17DAP | 0.92552 | 0.782 |
39DAP/27DAP | 0.81396 | 0.124 |
41DAP/39DAP | 0.65398 | 0.017 |
42DAP/41DAP | 1.1254 | 0.415 |
43DAP/42DAP | 1.09846 | 0.147 |
47DAP/43DAP | 0.89351 | 0.516 |
52DAP/47DAP | 0.93095 | 0.753 |
57DAP/52DAP | 1.07209 | 0.941 |
57DAP/7DAP | 0.59666 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99672 | 0.682 |
17DAP/reference | 0.67068 | 0.017 |
27DAP/reference | 0.68701 | 0.146 |
39DAP/reference | 1.16033 | 0.175 |
41DAP/reference | 1.12391 | 0.891 |
42DAP/reference | 0.85637 | 0.169 |
43DAP/reference | 1.04296 | 1 |
47DAP/reference | 0.95738 | 0.671 |
52DAP/reference | 1.10874 | 0.247 |
57DAP/reference | 0.77561 | 0.074 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76867 | 0.056 |
17DAP/reference | 1.20353 | 0.518 |
27DAP/reference | 0.71397 | 0.051 |
39DAP/reference | 1.09578 | 0.657 |
41DAP/reference | 0.36351 | |
42DAP/reference | 2.15002 | 0.025 |
43DAP/reference | 1.97531 | |
47DAP/reference | 0.93476 | 0.379 |
52DAP/reference | 0.98585 | 0.619 |
57DAP/reference | 1.4749 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87384 | 0.489 |
17DAP/reference | 0.63137 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.06197 | |
41DAP/reference | 0.91585 | 0.682 |
42DAP/reference | 1.90804 | 0.013 |
43DAP/reference | 0.66926 | |
47DAP/reference | N/A | N/A |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82701 | 1 |
26DAP/20DAP | 0.82273 | |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 0.91732 | 0.64 |
52DAP/51DAP | 2.88207 | 0.108 |
53DAP/52DAP | 1.3311 | 0.806 |
55DAP/53DAP | 1.4219 | 0.842 |
57DAP/55DAP | 0.80787 | 0.638 |
62DAP/57DAP | 3.3357 | 0.868 |
68DAP/62DAP | 1.93454 | |
68DAP/14DAP | 1.44953 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.24784 | 0.277 |
IL2-6/WTpooled | 1.20729 | 0.531 |
IL7-5/WTpooled | 0.60737 | 1 |
IL7-3/WTpooled | 1.18116 | 1 |
IL12-4/WTpooled | 0.73055 | 0.497 |
IL1-4/WTpooled | 1.2587 | 1 |
WT/WTpooled | 0.83557 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.11614 | 1 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.58931 | 0.03 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.95489 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.96682 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.79071 | 0.123 |
Manapal/WT (red) | 1.51513 | 0.413 |
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