Expression of 1-1-1.4.8.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07136 | 0.878 |
27DAP/17DAP | 1.19177 | 0.833 |
39DAP/27DAP | 1.58099 | 0.307 |
41DAP/39DAP | 0.92648 | 0.694 |
42DAP/41DAP | 1.88929 | 0.098 |
43DAP/42DAP | 1.38798 | 0.861 |
47DAP/43DAP | 1.57278 | 0.42 |
52DAP/47DAP | 0.69967 | 0.319 |
57DAP/52DAP | 1.30798 | 0.764 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01489 | 1 |
17DAP/reference | 1.10955 | 0.384 |
27DAP/reference | 1.24724 | 0.106 |
39DAP/reference | 1.3005 | 0.032 |
41DAP/reference | 1.21524 | 0.079 |
42DAP/reference | 1.24666 | 0.002 |
43DAP/reference | 1.10007 | 0.102 |
47DAP/reference | 1.49193 | 0.001 |
52DAP/reference | 1.25714 | 0.029 |
57DAP/reference | 1.34472 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93135 | 0.613 |
27DAP/17DAP | 1.31108 | 0.514 |
39DAP/27DAP | 1.62699 | 0.147 |
41DAP/39DAP | 0.63829 | 0.057 |
42DAP/41DAP | 1.40645 | 0.015 |
43DAP/42DAP | 1.95468 | 0.018 |
47DAP/43DAP | 1.62336 | 0.017 |
52DAP/47DAP | 1.3062 | 0.366 |
57DAP/52DAP | 0.71454 | 0.135 |
57DAP/7DAP | 3.32858 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87108 | 0.157 |
17DAP/reference | 0.74286 | 0.082 |
27DAP/reference | 0.98685 | 0.571 |
39DAP/reference | 0.78907 | 0.073 |
41DAP/reference | 0.9085 | 0.284 |
42DAP/reference | 1.04547 | 1 |
43DAP/reference | 1.19676 | 0.241 |
47DAP/reference | 1.32838 | 0.016 |
52DAP/reference | 1.10152 | 1 |
57DAP/reference | 0.85403 | 0.114 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95284 | 0.548 |
17DAP/reference | 1.02467 | 0.961 |
27DAP/reference | 1.33577 | 0.068 |
39DAP/reference | 1.15872 | 0.08 |
41DAP/reference | 1.14206 | 0.078 |
42DAP/reference | 1.45633 | 0.011 |
43DAP/reference | 1.25378 | 0.045 |
47DAP/reference | 1.60544 | 0.008 |
52DAP/reference | 1.11753 | 0.092 |
57DAP/reference | 0.96287 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74002 | 0.068 |
17DAP/reference | 0.86399 | 0.268 |
27DAP/reference | 0.85145 | 0.126 |
39DAP/reference | 0.89547 | 0.147 |
41DAP/reference | 0.86579 | 0.264 |
42DAP/reference | 1.11397 | 0.321 |
43DAP/reference | 1.01669 | 1 |
47DAP/reference | 1.31386 | 0.037 |
52DAP/reference | 1.44983 | 0.11 |
57DAP/reference | 1.4143 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04761 | 1 |
26DAP/20DAP | 1.63096 | 0.099 |
34DAP/26DAP | 0.96076 | 0.92 |
51DAP/34DAP | 1.5218 | 0.032 |
52DAP/51DAP | 0.72807 | 0.151 |
53DAP/52DAP | 1.47947 | 0.037 |
55DAP/53DAP | 0.7121 | 0.024 |
57DAP/55DAP | 0.99796 | 0.909 |
62DAP/57DAP | 1.01534 | 1 |
68DAP/62DAP | 1.00378 | 0.863 |
68DAP/14DAP | 1.61142 | 0.035 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 5.73098 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.88737 | 0.401 |
Mature Green Tomato/Ripe Tomato | 0.46958 | 0.02 |
Immature Eggplant/Mature Eggplant | 1.31361 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.84393 | 1 |
Mature Eggplant/Ripe Tomato | 0.62964 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16739 | 0.551 |
1-1-2/M82 | 1.20363 | 1 |
12-2/M82 | 0.91083 | |
12-4/M82 | 1.57001 | 1 |
1-3/M82 | 1.97452 | 0.248 |
2-1-1/M82 | 0.96367 | 1 |
2-1/M82 | 1.18156 | |
2-6/M82 | 0.92495 | 1 |
3-2/M82 | 1.11978 | 0.967 |
4-1-1/M82 | 1.30048 | 1 |
4-1/M82 | 1.10285 | |
4-3-2/M82 | 1.75601 | 0.508 |
4-3/M82 | 1.50614 | 0.268 |
5-3/M82 | 0.98559 | 1 |
6-2/M82 | 1.21888 | 1 |
6-3/M82 | 0.93384 | 1 |
7-1/M82 | 1.13357 | 1 |
7-2/M82 | 1.06142 | 1 |
9-3-2/M82 | 1.60293 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.26249 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.17613 | 0.362 |
IL12-4/WTpooled | 0.86808 | 0.71 |
IL1-4/WTpooled | 1.1689 | 0.426 |
WT/WTpooled | 0.79873 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18079 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00661 | 1 |
DC3000/delta hrp 6h | 0.94085 | 0.95 |
DC3000/delta hrp 12h | 1.36026 | 1 |
DC3000/delta hrp 24h | 1.15814 | 0.221 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16415 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.45288 | 0.083 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84902 | 1 |
Exp 36h | 1.32546 | 0.489 |
Exp 60h | 1.24547 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01269 | 1 |
Var 0h | 1.09414 | 0.98 |
Var 12h I row2-row1 | 0.96305 | 0.77 |
Var 12h NI row2-row1 | 1.20759 | 1 |
Var 36h I row2-row1 | 1.05191 | 1 |
Var 36h NI row2-row1 | 0.97007 | 0.791 |
Var 60h I row2-row1 | 0.65093 | 0.292 |
Var 60h NI row2-row1 | 0.80856 | 0.572 |
Time course 0hI-0hNI | 0.95124 | 0.623 |
Time course 12hI-12hNI | 1.00382 | 1 |
Time course 36hI-36hNI | 1.20801 | 0.248 |
Time course 60hI-60hNI | 2.64097 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00226 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.84879 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.94408 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.25618 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.69864 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86658 | 0.172 |
Manapal/WT (break) | 0.8708 | 1 |
Manapal/WT (red) | 0.79312 | 0.181 |
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