Expression of 1-1-1.4.8.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.071360.878
27DAP/17DAP1.191770.833
39DAP/27DAP1.580990.307
41DAP/39DAP0.926480.694
42DAP/41DAP1.889290.098
43DAP/42DAP1.387980.861
47DAP/43DAP1.572780.42
52DAP/47DAP0.699670.319
57DAP/52DAP1.307980.764

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.014891
17DAP/reference1.109550.384
27DAP/reference1.247240.106
39DAP/reference1.30050.032
41DAP/reference1.215240.079
42DAP/reference1.246660.002
43DAP/reference1.100070.102
47DAP/reference1.491930.001
52DAP/reference1.257140.029
57DAP/reference1.344720.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.931350.613
27DAP/17DAP1.311080.514
39DAP/27DAP1.626990.147
41DAP/39DAP0.638290.057
42DAP/41DAP1.406450.015
43DAP/42DAP1.954680.018
47DAP/43DAP1.623360.017
52DAP/47DAP1.30620.366
57DAP/52DAP0.714540.135
57DAP/7DAP3.328580.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.871080.157
17DAP/reference0.742860.082
27DAP/reference0.986850.571
39DAP/reference0.789070.073
41DAP/reference0.90850.284
42DAP/reference1.045471
43DAP/reference1.196760.241
47DAP/reference1.328380.016
52DAP/reference1.101521
57DAP/reference0.854030.114

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952840.548
17DAP/reference1.024670.961
27DAP/reference1.335770.068
39DAP/reference1.158720.08
41DAP/reference1.142060.078
42DAP/reference1.456330.011
43DAP/reference1.253780.045
47DAP/reference1.605440.008
52DAP/reference1.117530.092
57DAP/reference0.962870.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.740020.068
17DAP/reference0.863990.268
27DAP/reference0.851450.126
39DAP/reference0.895470.147
41DAP/reference0.865790.264
42DAP/reference1.113970.321
43DAP/reference1.016691
47DAP/reference1.313860.037
52DAP/reference1.449830.11
57DAP/reference1.41430.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.047611
26DAP/20DAP1.630960.099
34DAP/26DAP0.960760.92
51DAP/34DAP1.52180.032
52DAP/51DAP0.728070.151
53DAP/52DAP1.479470.037
55DAP/53DAP0.71210.024
57DAP/55DAP0.997960.909
62DAP/57DAP1.015341
68DAP/62DAP1.003780.863
68DAP/14DAP1.611420.035

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.730980.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.887370.401
Mature Green Tomato/Ripe Tomato0.469580.02
Immature Eggplant/Mature Eggplant1.313610.05
Ripe Pepper/Ripe Tomato0.843931
Mature Eggplant/Ripe Tomato0.629640.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.167390.551
1-1-2/M821.203631
12-2/M820.91083
12-4/M821.570011
1-3/M821.974520.248
2-1-1/M820.963671
2-1/M821.18156
2-6/M820.924951
3-2/M821.119780.967
4-1-1/M821.300481
4-1/M821.10285
4-3-2/M821.756010.508
4-3/M821.506140.268
5-3/M820.985591
6-2/M821.218881
6-3/M820.933841
7-1/M821.133571
7-2/M821.061421
9-3-2/M821.602931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.262490.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.176130.362
IL12-4/WTpooled0.868080.71
IL1-4/WTpooled1.16890.426
WT/WTpooled0.798731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.180790.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.006611
DC3000/delta hrp 6h0.940850.95
DC3000/delta hrp 12h1.360261
DC3000/delta hrp 24h1.158140.221

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.164150.27
DC3000 delta B/DC3000 delta AB1.452880.083

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.849021
Exp 36h1.325460.489
Exp 60h1.245470.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012691
Var 0h1.094140.98
Var 12h I row2-row10.963050.77
Var 12h NI row2-row11.207591
Var 36h I row2-row11.051911
Var 36h NI row2-row10.970070.791
Var 60h I row2-row10.650930.292
Var 60h NI row2-row10.808560.572
Time course 0hI-0hNI0.951240.623
Time course 12hI-12hNI1.003821
Time course 36hI-36hNI1.208010.248
Time course 60hI-60hNI2.640970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.002261
transgenic ySAMdc/azygous control (breaker)0.848790.173
transgenic ySAMdc/azygous control (red)0.944081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.256180.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.698640.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.866580.172
Manapal/WT (break)0.87081
Manapal/WT (red)0.793120.181