Expression of 1-1-1.4.9.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.154650.646
27DAP/17DAP0.895560.766
39DAP/27DAP0.755630.449
41DAP/39DAP1.730660.26
42DAP/41DAP1.321550.938
43DAP/42DAP1.024950.937
47DAP/43DAP0.937140.699
52DAP/47DAP1.430450.443
57DAP/52DAP0.837320.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.061170.179
17DAP/reference1.043310.148
27DAP/reference0.948030.369
39DAP/reference1.020990.615
41DAP/reference1.100030.054
42DAP/reference0.93190.005
43DAP/reference1.021430.617
47DAP/reference0.907690.006
52DAP/reference0.882980.053
57DAP/reference0.811340.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98180.716
27DAP/17DAP1.06641
39DAP/27DAP1.054120.526
41DAP/39DAP1.029480.817
42DAP/41DAP0.958470.734
43DAP/42DAP0.994530.991
47DAP/43DAP0.979570.902
52DAP/47DAP1.050690.851
57DAP/52DAP0.991730.838
57DAP/7DAP1.172120.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937970.224
17DAP/reference0.942190.064
27DAP/reference0.926250.048
39DAP/reference0.915250.015
41DAP/reference0.803520.039
42DAP/reference0.710270.01
43DAP/reference0.938490.22
47DAP/reference0.933450.293
52DAP/reference0.834080.09
57DAP/reference0.899480.093

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.097390.124
17DAP/reference1.062790.448
27DAP/reference0.939810.317
39DAP/reference0.970260.469
41DAP/reference0.926760.256
42DAP/reference0.838010.039
43DAP/reference1.092210.473
47DAP/reference0.840470.01
52DAP/reference1.018910.838
57DAP/reference1.127790.244

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.980210.489
17DAP/reference1.017880.842
27DAP/reference0.981990.286
39DAP/reference0.94880.101
41DAP/reference0.953650.07
42DAP/reference0.944460.22
43DAP/reference0.864460.179
47DAP/reference0.934540.286
52DAP/reference0.986230.747
57DAP/reference0.641970.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.007011
26DAP/20DAP0.966181
34DAP/26DAP1.000471
51DAP/34DAP0.992290.924
52DAP/51DAP1.026320.873
53DAP/52DAP1.05138
55DAP/53DAP0.987920.925
57DAP/55DAP1.027151
62DAP/57DAP1.176570.057
68DAP/62DAP0.927210.641
68DAP/14DAP0.957881

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.881030.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.556540.113
Mature Green Tomato/Ripe Tomato0.90870.522
Immature Eggplant/Mature Eggplant1.852410.05
Ripe Pepper/Ripe Tomato1.412411
Mature Eggplant/Ripe Tomato1.00241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.911260.883
1-1-2/M820.915010.804
12-2/M821.1991
12-4/M820.900861
1-3/M821.186121
2-1-1/M821.56636
2-1/M821.6743
2-6/M821.077561
3-2/M82N/AN/A
4-1-1/M820.958441
4-1/M821.053781
4-3-2/M820.885861
4-3/M821.03679
5-3/M820.972291
6-2/M820.931441
6-3/M820.964631
7-1/M821.0939
7-2/M821.059181
9-3-2/M820.802731

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.74910.321
IL2-6/WTpooled0.799280.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.053740.362
IL12-4/WTpooled0.702550.71
IL1-4/WTpooled0.88546
WT/WTpooled0.94411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.811240.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.953271
DC3000/delta hrp 6h0.939520.95
DC3000/delta hrp 12h1.161041
DC3000/delta hrp 24h0.994271

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.097160.16
DC3000 delta B/DC3000 delta AB1.041580.565

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.986261
Exp 36h1.063981
Exp 60h1.180371

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00331
Var 0h0.875490.933
Var 12h I row2-row11.090950.443
Var 12h NI row2-row10.93380.82
Var 36h I row2-row10.870320.575
Var 36h NI row2-row10.875280.549
Var 60h I row2-row11.194960.562
Var 60h NI row2-row11.240680.904
Time course 0hI-0hNI1.086350.574
Time course 12hI-12hNI1.048390.684
Time course 36hI-36hNI0.97060.484
Time course 60hI-60hNI1.355370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.941760.485
transgenic ySAMdc/azygous control (breaker)1.109040.248
transgenic ySAMdc/azygous control (red)1.081890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990040.305

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.188680.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.071641
Manapal/WT (break)0.761151
Manapal/WT (red)0.757310.181